Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq219432 181 1e-40 seq257780 145 9e-30 >seq219432 Length=1578 Score = 181 bits (200), Expect = 1e-40 Identities = 370/545 (68%), Gaps = 10/545 (2%) Strand=Plus/Minus Query 53930 TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT---CCAGGA 53986 |||||| ||||||||| ||| || || || |||||| || ||| ||| || ||| Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAA-CA--GTCGAATAGACCTGGA 658 Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 || |||| ||| ||| | | ||||| ||| | | || ||| |||||| || Sbjct 657 CACTCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGG 598 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 ||||||||||| ||||| || ||||| | |||||| ||| || || || || Sbjct 597 TCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTT 538 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 || || || | ||| || ||| || | ||||| ||||| | ||| || | | Sbjct 537 TTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAG 478 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | || |||||||||||||| |||||||| | || | |||||||| || ||||| | Sbjct 477 GCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGG 418 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 | |||||||| | ||| ||||| | ||||| || || | ||| | | || || Sbjct 417 AGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACCCTTGCTT 358 Query 54287 CGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATC 54344 | || | || ||| ||||| || || || || |||| || || | || || Sbjct 357 CTGATGCAATGAACGTTG--AGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACT 300 Query 54345 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 54404 | ||||| |||||||| ||||||||||| || || ||| ||||| | || ||| |||| | Sbjct 299 GCTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAAC 240 Query 54405 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 54464 | ||||| ||| | | || |||| ||||| | ||| ||||| |||||||| |||| Sbjct 239 TGGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACC 180 Query 54465 ATTTT 54469 | ||| Sbjct 179 ACTTT 175 >seq257780 Length=1265 Score = 145 bits (160), Expect = 9e-30 Identities = 309/468 (66%), Gaps = 34/468 (7%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| | ||| ||||| || ||| || ||||| || | || |||| ||| ||| Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || | || ||||| || |||||||| || ||||| || ||||||||||| || ||| Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT- 24304 |||||||||| || ||||| || |||||||| | || | ||| | | || | Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGAAACGTGGATTTT 295 Query 24305 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 |||| |||||||| | ||||| || ||||||||||| ||||| || | || | | Sbjct 294 GAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTGT 235 Query 24363 ATAGCATTAAAGAGATAGt--------------------tt-----------ttttCATT 24391 | || ||||||||| ||| || ||| | Sbjct 234 ACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGAT 175 Query 24392 ACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 24451 | ||| || | || || || || | ||| |||||| ||||| ||||| ||||| || Sbjct 174 AGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGAT 115 Query 24452 GGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCG 24511 || ||||| ||||| ||||| || | ||| || | | ||||||||| || || || Sbjct 114 TGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAACG 55 Query 24512 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 ||| | | || || || ||||| ||||| || || |||||||| || Sbjct 54 TTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590141488438080