Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq219432 181 1e-40
seq257780 145 9e-30
>seq219432
Length=1578
Score = 181 bits (200), Expect = 1e-40
Identities = 370/545 (68%), Gaps = 10/545 (2%)
Strand=Plus/Minus
Query 53930 TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT---CCAGGA 53986
|||||| ||||||||| ||| || || || |||||| || ||| ||| || |||
Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAA-CA--GTCGAATAGACCTGGA 658
Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046
|| |||| ||| ||| | | ||||| ||| | | || ||| |||||| ||
Sbjct 657 CACTCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGG 598
Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106
||||||||||| ||||| || ||||| | |||||| ||| || || || ||
Sbjct 597 TCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTT 538
Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166
|| || || | ||| || ||| || | ||||| ||||| | ||| || | |
Sbjct 537 TTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAG 478
Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226
| || |||||||||||||| |||||||| | || | |||||||| || ||||| |
Sbjct 477 GCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGG 418
Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286
| |||||||| | ||| ||||| | ||||| || || | ||| | | || ||
Sbjct 417 AGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACCCTTGCTT 358
Query 54287 CGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATC 54344
| || | || ||| ||||| || || || || |||| || || | || ||
Sbjct 357 CTGATGCAATGAACGTTG--AGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACT 300
Query 54345 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 54404
| ||||| |||||||| ||||||||||| || || ||| ||||| | || ||| |||| |
Sbjct 299 GCTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAAC 240
Query 54405 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 54464
| ||||| ||| | | || |||| ||||| | ||| ||||| |||||||| ||||
Sbjct 239 TGGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACC 180
Query 54465 ATTTT 54469
| |||
Sbjct 179 ACTTT 175
>seq257780
Length=1265
Score = 145 bits (160), Expect = 9e-30
Identities = 309/468 (66%), Gaps = 34/468 (7%)
Strand=Plus/Minus
Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185
|||| | ||| ||||| || ||| || ||||| || | || |||| ||| |||
Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415
Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245
|| || | || ||||| || |||||||| || ||||| || ||||||||||| || |||
Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT- 24304
|||||||||| || ||||| || |||||||| | || | ||| | | || |
Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGAAACGTGGATTTT 295
Query 24305 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362
|||| |||||||| | ||||| || ||||||||||| ||||| || | || | |
Sbjct 294 GAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTGT 235
Query 24363 ATAGCATTAAAGAGATAGt--------------------tt-----------ttttCATT 24391
| || ||||||||| ||| || ||| |
Sbjct 234 ACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGAT 175
Query 24392 ACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 24451
| ||| || | || || || || | ||| |||||| ||||| ||||| ||||| ||
Sbjct 174 AGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGAT 115
Query 24452 GGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCG 24511
|| ||||| ||||| ||||| || | ||| || | | ||||||||| || || ||
Sbjct 114 TGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAACG 55
Query 24512 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559
||| | | || || || ||||| ||||| || || |||||||| ||
Sbjct 54 TTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590141488438080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |