Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq257780 145 8e-30 seq233574 114 1e-20 seq46948 111 2e-19 seq154141 105 7e-18 seq21692 104 2e-17 seq46123 98.7 1e-15 seq29733 98.7 1e-15 >seq257780 Length=1265 Score = 145 bits (160), Expect = 8e-30 Identities = 317/476 (67%), Gaps = 33/476 (7%) Strand=Plus/Plus Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || || ||||| ||||| |||||||| || ||||||||||| || || || |||||| Sbjct 1 GTTCTTGCATTTTTTGCCGCAAGCGACGGGATAGTCAACGAGAACCTTGTGGAACGTTTC 60 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 ||| || || || || | || || || |||||||| || || || || || || || Sbjct 61 AGTCAAGAAGTACAAGTCCCGGAAGCTCGTTGCTTCTATGGATTCCAAATTGCAATCGAA 120 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGGA 116931 || | |||||||| |||||||| |||||||||||||||| | | | ||| | Sbjct 121 AATATTCACTCGGAGATGTATTCTCTCCTCATCGACACGTACATCAAGGATCCTATCGAA 180 Query 116932 GGAGA--------AGCTC---------------CG----TTTGTTGAACGCCATCGAGAC 116964 | | | ||| || | | || ||||| | | || Sbjct 181 CGGTACTTCCTCTAACTCTTATTTTATTTTTAGCGACTTTCTCTTTAACGCAGTACAAAC 240 Query 116965 GATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGC 117024 | || || || ||| ||||||| || ||||| || ||||| | | | | | | Sbjct 241 CCTTCCCTGTGTGAAAAAGAAGGCTGACTGGGCACTCAAGTGGATTGGTGACTCAAAATC 300 Query 117025 CGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC-GGGCA 117083 | | || ||||||||||| ||||| || ||||| ||||| || |||||||| ||| Sbjct 301 CACGTTTCCAGAGCGCCTGGTAGCCTTTGCAGCCGTAGAGGGGGTTTTCTTTTCTGGGTC 360 Query 117084 GTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCA 117143 |||| || |||| || ||||| ||||| || || || ||||| || |||| ||||||| Sbjct 361 GTTT-GCGTCCATCTTCTGGCTGAAGAAGCGTGGGCTTATGCCAGGGTTGACATTCAGCA 419 Query 117144 ACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 | || || || | | || ||||| || || ||||| || ||| | |||||| Sbjct 420 ATGAACTAATAAGCCGTGATGAGGGACTTCACACTGACTTCGCTTGTCTTCTGTTC 475 >seq233574 Length=1449 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| ||||| || | || || || | | Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGT 138 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | |||| || |||| ||||| || ||||||||| | ||||| Sbjct 139 GACTCGATTGAGAATG-TGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCA 197 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || || || ||| |||| |||| || || || |||||||| Sbjct 198 GCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAA 257 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | |||||||| || || Sbjct 258 CATCCAGAAGGAGTCAACGCTGCACCTGGT 287 >seq46948 Length=6204 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | |||||||| || ||||| | || ||||| ||| Sbjct 1299 ATGCAGATCTTTGTGAAGACATTGACGGGCAAGACTATCACTCTGGAGGTCGAGCCCAGT 1358 Query 40750 GAC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||| | || | |||| | |||| || || | ||||| ||||| ||||| | ||| Sbjct 1359 GACTCGATCGAG--AACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGAC 1415 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| || || || ||||| || |||| ||||||||| ||||||| Sbjct 1416 CAGCAGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCTCTCCGACTAC 1475 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| || ||||| | || |||| || || ||||| Sbjct 1476 AACATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCG 1513 >seq154141 Length=2423 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| ||||| || | || || || | | | Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGC 138 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | ||| || || | ||||| || |||||||| | ||||| Sbjct 139 GACTCGATTGAGAATG-TGAAGACGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 197 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || || || ||| |||| |||| || || || |||||||| Sbjct 198 GCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAA 257 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || |||||||| || Sbjct 258 CATCCAGAAGGAGTCAACACTGCATCTGGT 287 >seq21692 Length=9146 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || ||||| || || || || || |||||| |||| || || | | Sbjct 2702 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTCG 2761 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | |||| || |||| || || ||||| ||||| | ||||| Sbjct 2762 GACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCAA 2821 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| ||||||||||| || |||| |||||| ||| || || || Sbjct 2822 CAGCGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAAT 2881 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| | || ||||| || || |||| Sbjct 2882 ATCCAAAAGGAGTCGACTCTGCACCTGGTCCTGCG 2916 >seq46123 Length=6266 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| || || || | || || || ||| Sbjct 1177 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 1236 Query 40750 GAC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||| | || | || | | |||| || || | ||||| ||||| ||||| | ||| Sbjct 1237 GACTCGATCGAG--AATG-TGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGAC 1293 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| || ||||||||||| || || | |||||||| ||| ||| Sbjct 1294 CAGCAGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTAC 1353 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| || || || | || |||| || || ||||| | | |||||| Sbjct 1354 AACATTCAAAAAGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGGC 1404 >seq29733 Length=7895 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| || || || | || || || ||| Sbjct 496 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 555 Query 40750 GAC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||| | || | || | | |||| || || | ||||| ||||| ||||| | ||| Sbjct 556 GACTCGATCGAG--AATG-TGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGAC 612 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || ||||||||||| || || | |||||||| ||| ||| Sbjct 613 CAGCAGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTAC 672 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| || ||||| | || |||| || || ||||| | | |||||| Sbjct 673 AACATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGGC 723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512112453984960