Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq257780 145 8e-30
seq233574 114 1e-20
seq46948 111 2e-19
seq154141 105 7e-18
seq21692 104 2e-17
seq46123 98.7 1e-15
seq29733 98.7 1e-15
>seq257780
Length=1265
Score = 145 bits (160), Expect = 8e-30
Identities = 317/476 (67%), Gaps = 33/476 (7%)
Strand=Plus/Plus
Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815
|| || || ||||| ||||| |||||||| || ||||||||||| || || || ||||||
Sbjct 1 GTTCTTGCATTTTTTGCCGCAAGCGACGGGATAGTCAACGAGAACCTTGTGGAACGTTTC 60
Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875
||| || || || || | || || || |||||||| || || || || || || ||
Sbjct 61 AGTCAAGAAGTACAAGTCCCGGAAGCTCGTTGCTTCTATGGATTCCAAATTGCAATCGAA 120
Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGGA 116931
|| | |||||||| |||||||| |||||||||||||||| | | | ||| |
Sbjct 121 AATATTCACTCGGAGATGTATTCTCTCCTCATCGACACGTACATCAAGGATCCTATCGAA 180
Query 116932 GGAGA--------AGCTC---------------CG----TTTGTTGAACGCCATCGAGAC 116964
| | | ||| || | | || ||||| | | ||
Sbjct 181 CGGTACTTCCTCTAACTCTTATTTTATTTTTAGCGACTTTCTCTTTAACGCAGTACAAAC 240
Query 116965 GATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGC 117024
| || || || ||| ||||||| || ||||| || ||||| | | | | | |
Sbjct 241 CCTTCCCTGTGTGAAAAAGAAGGCTGACTGGGCACTCAAGTGGATTGGTGACTCAAAATC 300
Query 117025 CGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC-GGGCA 117083
| | || ||||||||||| ||||| || ||||| ||||| || |||||||| |||
Sbjct 301 CACGTTTCCAGAGCGCCTGGTAGCCTTTGCAGCCGTAGAGGGGGTTTTCTTTTCTGGGTC 360
Query 117084 GTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCA 117143
|||| || |||| || ||||| ||||| || || || ||||| || |||| |||||||
Sbjct 361 GTTT-GCGTCCATCTTCTGGCTGAAGAAGCGTGGGCTTATGCCAGGGTTGACATTCAGCA 419
Query 117144 ACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199
| || || || | | || ||||| || || ||||| || ||| | ||||||
Sbjct 420 ATGAACTAATAAGCCGTGATGAGGGACTTCACACTGACTTCGCTTGTCTTCTGTTC 475
>seq233574
Length=1449
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||||| || ||||| ||||| || | || || || | |
Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGT 138
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | || || | | |||| || |||| ||||| || ||||||||| | |||||
Sbjct 139 GACTCGATTGAGAATG-TGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCA 197
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| || || || ||| |||| |||| || || || ||||||||
Sbjct 198 GCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAA 257
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | |||||||| || ||
Sbjct 258 CATCCAGAAGGAGTCAACGCTGCACCTGGT 287
>seq46948
Length=6204
Score = 111 bits (122), Expect = 2e-19
Identities = 157/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || | |||||||| || ||||| | || ||||| |||
Sbjct 1299 ATGCAGATCTTTGTGAAGACATTGACGGGCAAGACTATCACTCTGGAGGTCGAGCCCAGT 1358
Query 40750 GAC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
||| | || | |||| | |||| || || | ||||| ||||| ||||| | |||
Sbjct 1359 GACTCGATCGAG--AACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGAC 1415
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| ||||| |||| || || || ||||| || |||| ||||||||| |||||||
Sbjct 1416 CAGCAGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCTCTCCGACTAC 1475
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||| || ||||| | || |||| || || |||||
Sbjct 1476 AACATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCG 1513
>seq154141
Length=2423
Score = 105 bits (116), Expect = 7e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||||| || ||||| ||||| || | || || || | | |
Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGC 138
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | || || | | ||| || || | ||||| || |||||||| | |||||
Sbjct 139 GACTCGATTGAGAATG-TGAAGACGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 197
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| || || || ||| |||| |||| || || || ||||||||
Sbjct 198 GCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAA 257
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || |||||||| ||
Sbjct 258 CATCCAGAAGGAGTCAACACTGCATCTGGT 287
>seq21692
Length=9146
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| ||||| || ||||| || || || || || |||||| |||| || || | |
Sbjct 2702 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTCG 2761
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
||| | | | | |||| || |||| || || ||||| ||||| | |||||
Sbjct 2762 GACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCAA 2821
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | |||| ||| ||||||||||| || |||| |||||| ||| || || ||
Sbjct 2822 CAGCGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAAT 2881
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||| |||||| | || ||||| || || ||||
Sbjct 2882 ATCCAAAAGGAGTCGACTCTGCACCTGGTCCTGCG 2916
>seq46123
Length=6266
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| || || ||||| || || || | || || || |||
Sbjct 1177 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 1236
Query 40750 GAC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
||| | || | || | | |||| || || | ||||| ||||| ||||| | |||
Sbjct 1237 GACTCGATCGAG--AATG-TGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGAC 1293
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| ||||| |||| || ||||||||||| || || | |||||||| ||| |||
Sbjct 1294 CAGCAGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTAC 1353
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||| || || || | || |||| || || ||||| | | ||||||
Sbjct 1354 AACATTCAAAAAGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGGC 1404
>seq29733
Length=7895
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| || || ||||| || || || | || || || |||
Sbjct 496 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 555
Query 40750 GAC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
||| | || | || | | |||| || || | ||||| ||||| ||||| | |||
Sbjct 556 GACTCGATCGAG--AATG-TGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGAC 612
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| || ||||||||||| || || | |||||||| ||| |||
Sbjct 613 CAGCAGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTAC 672
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||| || ||||| | || |||| || || ||||| | | ||||||
Sbjct 673 AACATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGGC 723
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 512112453984960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |