Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq46948 98.7 1e-15 seq1202 87.8 3e-12 >seq46948 Length=6204 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||| | || || |||||||| ||| | ||| | || | | Sbjct 1527 ATGCAAATCTTTGTGAAGACATTGACGGGTAAAACTATTACTCTGGAGGTCGAGCCTAGC 1586 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| ||| | ||| ||| || || || |||||||| || ||||| || ||| Sbjct 1587 GACTCCATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1646 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || || || || || || | ||||| | || || | ||| || ||| Sbjct 1647 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACGCTCTCAGACTACAAT 1706 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||| || || || |||| ||||| | ||| | || ||||| Sbjct 1707 ATTCAAAAGGAGTCTACACTGCACTTGGTGCTGCGTCTTCGTGGTGG 1753 >seq1202 Length=22811 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || ||||| || || ||||| || | || ||||| | Sbjct 3602 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTCG 3661 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | || || ||||| ||||| || ||||| || || || ||| Sbjct 3662 GACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCAA 3721 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || |||||| | ||||| | || || | ||||||||| Sbjct 3722 CAGCGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAAT 3781 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| || || ||| |||| |||| | || | || |||||| Sbjct 3782 ATCCAAAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTTCGTGGTGGT 3829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750900638092800