Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq233574 122 6e-23 seq154141 116 2e-21 seq46123 113 3e-20 seq29733 113 3e-20 seq46948 107 1e-18 seq198463 82.4 5e-11 >seq233574 Length=1449 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||||||| | || || ||||| ||||||||||| ||| Sbjct 305 CCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| ||||||||||| || || || || || || |||||||| ||| Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGG 186 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | ||||| || ||| || || Sbjct 185 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 126 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| ||||| ||||| || || || ||||| ||||||||||| Sbjct 125 TCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79 >seq154141 Length=2423 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||| || | || || ||||| ||||||||||| ||| Sbjct 305 CCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| ||||||||||| || || || || || || |||||||| || Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGG 186 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | ||||| ||| ||| || || Sbjct 185 ATGCCTTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACC 126 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| ||||| ||||| || || || ||||| ||||||||||| Sbjct 125 TCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79 >seq46123 Length=6266 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || |||||||| || || |||||| || |||||||| ||||| Sbjct 1403 CCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAA 1344 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | ||| ||||| || || || || ||||||||||| | |||| Sbjct 1343 AGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGG 1284 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | ||||| || | | || || Sbjct 1283 -ATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAAC 1225 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 |||| || || || |||||||| || ||||| || ||||||||||| || Sbjct 1224 CTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 1174 Score = 93.3 bits (102), Expect = 3e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 34211 TTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGC 34270 ||||| ||||| || || |||| || | |||||| || || || || || |||||| Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039 Query 34271 TGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATC 34329 ||||| | |||| | | ||||||||| ||||| ||| | || | ||||| || Sbjct 2038 TGGTCTGGCGGGATCCC-CTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTC 1980 Query 34330 GGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | | || || |||| ||||| ||||||||||| | |||||||||||||||||||| Sbjct 1979 ACTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| ||||| || ||| | || || | ||||||||||||||| Sbjct 1596 TTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAA 1537 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | || ||| ||||| || | || || ||||| |||||| ||||| | || Sbjct 1536 GATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTT-GCTTTCACAT 1478 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || || ||| | | ||||| |||| || || || ||||| || | || || | Sbjct 1477 TCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCCCGTCAAGGTCTTTA 1418 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 1417 CAAAGATCTGCAT 1405 >seq29733 Length=7895 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || |||||||| || || ||| || || |||||||| ||||| Sbjct 722 CCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAA 663 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | ||| ||||| || || || |||||||||||||| | |||| Sbjct 662 AGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGG 603 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | ||||| || | | || || Sbjct 602 -ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAAC 544 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 |||| || || || |||||||| || ||||| || ||||||||||| || Sbjct 543 CTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 493 >seq46948 Length=6204 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || |||||||| || || ||| || || |||||||||||||| Sbjct 1525 CCACCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1466 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || || |||| || | |||||| || || || || || ||||||||||| | |||| Sbjct 1465 AGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGG 1406 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | ||||| || | | ||||| Sbjct 1405 -ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGAC 1347 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||| || | || ||||||||||||||||| Sbjct 1346 CTCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| || || ||| || || |||||||| || || Sbjct 1069 CCGCCGCGGAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAA 1010 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | || ||||| || || || || ||||| ||||| | |||| Sbjct 1009 AGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGG 950 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | ||||| || | | || || Sbjct 949 -ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAAC 891 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 |||| || || || |||||||| || ||||| || ||||||||||| || Sbjct 890 CTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 840 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 |||| || || || | |||||||| ||| | ||| || || || || |||||||| | Sbjct 1755 ATCCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTG 1696 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 | ||| ||| |||| || | |||||| || ||||| || | || ||| ||||| | Sbjct 1695 AGAGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTG 1636 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG 34339 | | || || ||||| ||||| ||||| | || | || || ||| | | ||| Sbjct 1635 GGATGCCTTCTTTGTCCTGGATCTTC-GCTTTCACATTCTCAATGGAGTCGCTAGGCTCG 1577 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| || || ||||| || || | || ||||||||||| ||||| Sbjct 1576 ACCTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527 >seq198463 Length=1796 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || ||||| || | || |||||||| ||||||||||| ||| Sbjct 1684 CCGCCGCGAAGACGAAGGACCAGATGCAGTGTTGACTCTTTCTGGATGTTGTAGTCTGAC 1743 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| ||| |||| ||||||||||| || || || || || || |||||||| Sbjct 1744 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTC 1796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321172594693760