Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq46948 84.2 2e-11 >seq46948 Length=6204 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || || ||||| || |||||||||||||| |||| | || | ||| || Sbjct 1279 ACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATCCTCA 1220 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||||||||| || |||| | || ||||| ||| || | |||||| || || Sbjct 1219 AGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCCTGG 1160 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | |||| || || | ||| || ||| | ||||||| || | ||| || | || Sbjct 1159 ATCT-TTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGTCTT 1101 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||| || |||||||| || ||||| Sbjct 1100 GCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377113760281020