Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq46948 100 2e-16 >seq46948 Length=6204 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || ||||| || ||||| ||||| ||| | || ||||| | ||| Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 ||| | | || | ||| || | ||| || | ||||||||| | ||| ||||| Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCGCCGGACCAA 1190 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | || || | || ||||||||||| || ||| | ||| | |||||||| | Sbjct 1191 CAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAAC 1250 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || || ||| | || || ||||| || || || | ||||| ||| Sbjct 1251 ATTCAAAAGGAGTCAACCCTGCATTTGGTCTTGCGCCTTCGCGGTGGT 1298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415844706600320