Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq219432 149 6e-31
seq154141 100 3e-16
seq233574 96.9 3e-15
seq21692 91.5 1e-13
seq46948 87.8 2e-12
seq1202 87.8 2e-12
>seq219432
Length=1578
Score = 149 bits (164), Expect = 6e-31
Identities = 316/468 (68%), Gaps = 8/468 (2%)
Strand=Plus/Minus
Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296
||||| |||||| ||| |||||| || ||||| |||| |||||||| ||
Sbjct 723 CCTTCCGACTCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAACAGTCGAATAGA 664
Query 23297 CCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTCT 23352
|| || | | ||| ||| ||| ||| ||||| | ||| || || |||||||
Sbjct 663 CCTGGACACT-CATGAGGATCCATTAGAGTCCACTT---GTCGTTGGCTTGGACGCGTCG 608
Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412
|||||| || || || ||||| ||||||| ||| || || || | | || ||
Sbjct 607 CATAAATAGGTCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGC 548
Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472
||| ||||| || || || | ||| | || | ||| | ||||| || || |||||
Sbjct 547 GCCAGTGTTTTTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTA 488
Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532
|| || || ||||| || | || || ||||||||||| || || ||||| ||||||||
Sbjct 487 AATCGCGAAGGCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTT 428
Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592
||| || | ||||| || || | |||||||||| | || | ||||| | | |
Sbjct 427 GTAAACGCGGAGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGT 368
Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652
||| || || | | ||||||| || ||| ||||| || | ||| ||||| |
Sbjct 367 ACCCTTGCTTCTGATGCAATGAACGTTGAGACCGATGCCGCCAGCATTTTTGGATATAAG 308
Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700
||| || || || | || || || |||||||| |||||||| || ||
Sbjct 307 CGCACACTGCTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTT 260
>seq154141
Length=2423
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| ||||| ||||| || || || | || || || |||
Sbjct 78 CATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAG 137
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || || || ||||||||||||| | || || |||||
Sbjct 138 CGACTCGATTGAGAATGTGAAGACGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 197
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| ||||| || || ||||| || |||||||||||| | || || || || ||
Sbjct 198 GCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAA 257
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || |||||||| ||
Sbjct 258 CATCCAGAAGGAGTCAACACTGCATCTGGTTCT 290
>seq233574
Length=1449
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| ||||| ||||| || || || | || || || |||
Sbjct 78 CATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAG 137
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | || | || || || || ||||||||||||| | || || |||||
Sbjct 138 TGACTCGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCA 197
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| ||||| || || ||||| || |||||||||||| | || || || || ||
Sbjct 198 GCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAA 257
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || || || || ||||| ||| | ||| | || ||
Sbjct 258 CATCCAGAAGGAGTCAACGCTGCACCTGGTTCTTCGTCTGCGTGGTGG 305
>seq21692
Length=9146
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || || || || || || || || |||||| |||| ||||| || ||
Sbjct 2701 CATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTC 2760
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | || | || || | || ||| ||||| || | ||||| |||||
Sbjct 2761 GGACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCA 2820
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||| |||| ||||||||||||||| | || ||| ||| | ||||||||
Sbjct 2821 ACAGCGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAA 2880
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| ||||| || |||||||| || ||||| ||
Sbjct 2881 TATCCAAAAGGAGTCGACTCTGCACCTGGTCCT 2913
>seq46948
Length=6204
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || |||||||| |||| ||||| ||||| ||| | || || || || |
Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | | || | || ||| || ||| | |||||| |||||| | ||||| |||||
Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGA-TCCAGGACAAAGAAGGCATCCCGCCGGACCA 1189
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | | || ||||| |||||||| | || || ||| | |||||| ||
Sbjct 1190 ACAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAA 1249
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401
||||||||| || || || || ||| ||||
Sbjct 1250 CATTCAAAAGGAGTCAACCCTGCATTTGGT 1279
>seq1202
Length=22811
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || || || || || || || || |||||| |||| |||| || ||
Sbjct 3601 CATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTC 3660
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | || | || || | || ||| ||||| || | ||||| |||||
Sbjct 3661 GGACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCA 3720
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||| ||||| |||||||||||||| | || ||| ||| | ||||||||
Sbjct 3721 ACAGCGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAA 3780
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| ||||| || |||||||| || ||||| ||
Sbjct 3781 TATCCAAAAGGAGTCGACTCTGCACCTGGTCCT 3813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443078450896320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |