Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq219432 149 6e-31 seq154141 100 3e-16 seq233574 96.9 3e-15 seq21692 91.5 1e-13 seq46948 87.8 2e-12 seq1202 87.8 2e-12 >seq219432 Length=1578 Score = 149 bits (164), Expect = 6e-31 Identities = 316/468 (68%), Gaps = 8/468 (2%) Strand=Plus/Minus Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 ||||| |||||| ||| |||||| || ||||| |||| |||||||| || Sbjct 723 CCTTCCGACTCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAACAGTCGAATAGA 664 Query 23297 CCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTCT 23352 || || | | ||| ||| ||| ||| ||||| | ||| || || ||||||| Sbjct 663 CCTGGACACT-CATGAGGATCCATTAGAGTCCACTT---GTCGTTGGCTTGGACGCGTCG 608 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 |||||| || || || ||||| ||||||| ||| || || || | | || || Sbjct 607 CATAAATAGGTCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGC 548 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||| ||||| || || || | ||| | || | ||| | ||||| || || ||||| Sbjct 547 GCCAGTGTTTTTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTA 488 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 || || || ||||| || | || || ||||||||||| || || ||||| |||||||| Sbjct 487 AATCGCGAAGGCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTT 428 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 ||| || | ||||| || || | |||||||||| | || | ||||| | | | Sbjct 427 GTAAACGCGGAGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGT 368 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 ||| || || | | ||||||| || ||| ||||| || | ||| ||||| | Sbjct 367 ACCCTTGCTTCTGATGCAATGAACGTTGAGACCGATGCCGCCAGCATTTTTGGATATAAG 308 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 ||| || || || | || || || |||||||| |||||||| || || Sbjct 307 CGCACACTGCTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTT 260 >seq154141 Length=2423 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || || || | || || || ||| Sbjct 78 CATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAG 137 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || || || ||||||||||||| | || || ||||| Sbjct 138 CGACTCGATTGAGAATGTGAAGACGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 197 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||||| || || ||||| || |||||||||||| | || || || || || Sbjct 198 GCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAA 257 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || |||||||| || Sbjct 258 CATCCAGAAGGAGTCAACACTGCATCTGGTTCT 290 >seq233574 Length=1449 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || || || | || || || ||| Sbjct 78 CATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAG 137 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | || || || || ||||||||||||| | || || ||||| Sbjct 138 TGACTCGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCA 197 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||||| || || ||||| || |||||||||||| | || || || || || Sbjct 198 GCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAA 257 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| ||| | ||| | || || Sbjct 258 CATCCAGAAGGAGTCAACGCTGCACCTGGTTCTTCGTCTGCGTGGTGG 305 >seq21692 Length=9146 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || || || || || || |||||| |||| ||||| || || Sbjct 2701 CATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTC 2760 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | || || | || ||| ||||| || | ||||| ||||| Sbjct 2761 GGACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCA 2820 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| |||| ||||||||||||||| | || ||| ||| | |||||||| Sbjct 2821 ACAGCGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAA 2880 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || |||||||| || ||||| || Sbjct 2881 TATCCAAAAGGAGTCGACTCTGCACCTGGTCCT 2913 >seq46948 Length=6204 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||||||| |||| ||||| ||||| ||| | || || || || | Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | || ||| || ||| | |||||| |||||| | ||||| ||||| Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGA-TCCAGGACAAAGAAGGCATCCCGCCGGACCA 1189 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || ||||| |||||||| | || || ||| | |||||| || Sbjct 1190 ACAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAA 1249 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||||| || || || || ||| |||| Sbjct 1250 CATTCAAAAGGAGTCAACCCTGCATTTGGT 1279 >seq1202 Length=22811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || || || || || || |||||| |||| |||| || || Sbjct 3601 CATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTC 3660 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | || || | || ||| ||||| || | ||||| ||||| Sbjct 3661 GGACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCA 3720 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| ||||| |||||||||||||| | || ||| ||| | |||||||| Sbjct 3721 ACAGCGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAA 3780 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || |||||||| || ||||| || Sbjct 3781 TATCCAAAAGGAGTCGACTCTGCACCTGGTCCT 3813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443078450896320