Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq219432 172 7e-38
seq257780 122 1e-22
>seq219432
Length=1578
Score = 172 bits (190), Expect = 7e-38
Identities = 368/545 (68%), Gaps = 10/545 (2%)
Strand=Plus/Minus
Query 63168 TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA---GGA 63224
|||||| |||||||| |||||| || || |||||| || ||| ||| | |||
Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAA-CA--GTCGAATAGACCTGGA 658
Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284
|| |||| ||| ||| | | ||||| ||| | | || ||| |||||| ||
Sbjct 657 CACTCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGG 598
Query 63285 TCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344
||||||||||| ||||| || ||||| | |||||| ||| || || || ||
Sbjct 597 TCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTT 538
Query 63345 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404
|| || || | ||| || ||| || | ||||| ||||| | ||| || || |
Sbjct 537 TTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAG 478
Query 63405 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63464
| || |||||||||||||| |||||||| | || | |||||||| || ||||| |
Sbjct 477 GCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGG 418
Query 63465 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCA 63524
| |||||||| | |||||| || ||||| ||||| | ||| | || ||
Sbjct 417 AGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACCCTTGCTT 358
Query 63525 CGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63582
| || | || ||| ||||| || || || || |||| || || | || ||
Sbjct 357 CTGATGCAATGAACGTTG--AGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACT 300
Query 63583 GTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGC 63642
| ||||| || ||||| ||||| |||||||| || || ||||| | || ||| |||| |
Sbjct 299 GCTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAAC 240
Query 63643 TAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63702
| ||||| ||| | || || |||| ||||| | ||| ||||| |||||||| ||||
Sbjct 239 TGGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACC 180
Query 63703 ATTTT 63707
| |||
Sbjct 179 ACTTT 175
>seq257780
Length=1265
Score = 122 bits (134), Expect = 1e-22
Identities = 304/468 (65%), Gaps = 34/468 (7%)
Strand=Plus/Minus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| | ||| ||||| || ||| || ||||| || | || |||| ||| ||
Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| || | || ||||| || |||||||| || ||||| || ||||| || || || ||
Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33751
|||||||| | || ||||| || |||||||| | || | |||| | | || |
Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGAAACGTGGATTTT 295
Query 33752 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809
|||| |||||||| | ||||| || ||||||||||| ||||| || | |||| |
Sbjct 294 GAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTGT 235
Query 33810 ATGGCATTAAAGAGATAGt--------------------tt-----------ttttCATT 33838
| || ||||||||| ||| || ||| |
Sbjct 234 ACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGAT 175
Query 33839 ACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 33898
| ||| || | || || ||||| | ||| |||||| ||||| ||||| ||||| ||
Sbjct 174 AGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGAT 115
Query 33899 GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCG 33958
|| || || ||||| ||||| || | ||| || | | || |||||| || || ||
Sbjct 114 TGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAACG 55
Query 33959 TTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006
||| | | || || || ||||| || || || || |||||||| ||
Sbjct 54 TTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626019831362880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |