Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq219432 179 5e-40
seq257780 152 7e-32
>seq219432
Length=1578
Score = 179 bits (198), Expect = 5e-40
Identities = 372/546 (68%), Gaps = 12/546 (2%)
Strand=Plus/Minus
Query 65961 TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT---CCAGGA 66017
|||||| ||||||||| |||||| || || |||||| || ||| ||| || |||
Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAA-CA--GTCGAATAGACCTGGA 658
Query 66018 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 66077
|| |||| ||| ||| | | ||||| ||| | | || ||| |||||| ||
Sbjct 657 CACTCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGG 598
Query 66078 TCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137
||||||||||| ||||| || | ||| | |||||| ||| || || || ||
Sbjct 597 TCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTT 538
Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197
|| || || | ||| || ||| || ||||| ||||| | ||| || || |
Sbjct 537 TTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAG 478
Query 66198 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257
| || |||||||||||||| |||||||| | || | |||||||| || ||||| |
Sbjct 477 GCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGG 418
Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317
| |||||||| | ||| ||||| ||||| || || | ||| | | || |||||
Sbjct 417 AGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACC-CTTGCT 359
Query 66318 -CGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 66374
| || | || |||| |||| || || || || |||| || || | || ||
Sbjct 358 TCTGATGCAATGAACGTTGA--GACCGATGCCGCCAGCATTTTTGGATATAAGCGCACAC 301
Query 66375 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 66434
| ||||| |||||||| ||||||||||| || || ||| ||||| | || ||| ||||
Sbjct 300 TGCTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAA 241
Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494
|| ||||| ||| | | || |||| ||||| | ||| ||||| |||||||| |||
Sbjct 240 CTGGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAAC 181
Query 66495 CATTTT 66500
|| |||
Sbjct 180 CACTTT 175
>seq257780
Length=1265
Score = 152 bits (168), Expect = 7e-32
Identities = 312/469 (67%), Gaps = 36/469 (8%)
Strand=Plus/Minus
Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208
|||| | ||| ||||| || ||| || ||||| || | || |||| ||| |||
Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415
Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268
|| || | || ||||| || |||||||| || ||||| || ||||||||||| || |||
Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355
Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 36327
|||||||||| || ||||| || |||||||| | || | |||| | ||| | | |
Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGA-AACGTGGATTT 296
Query 36328 ---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384
|||| |||||||| | ||||| || ||||||||||| ||||| || | || |
Sbjct 295 TGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTG 236
Query 36385 TATAGCATTAAAGAGATAGt--------------------tt-----------ttttCAT 36413
|| || ||||||||| ||| || |||
Sbjct 235 TACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGA 176
Query 36414 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 36473
|| ||| || | || || || || | ||| |||||| ||||| ||||| ||||| |
Sbjct 175 TAGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGA 116
Query 36474 TGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 36533
| || ||||| ||||| ||||| || | ||| || | | ||||||||| || || |
Sbjct 115 TTGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAAC 56
Query 36534 GTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582
|||| | | || || || ||||| ||||| || || |||||||| ||
Sbjct 55 GTTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 654204050924640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |