Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq46123 111 2e-19
seq233574 109 5e-19
seq154141 109 5e-19
seq46948 105 7e-18
seq29733 105 7e-18
>seq46123
Length=6266
Score = 111 bits (122), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
|||||| || | ||||| || | ||| | || || |||||||||||||| ||||||
Sbjct 1404 GCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGA 1345
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| |||||||||||||| || ||| ||||||| || ||||| || || ||
Sbjct 1344 AAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGG 1285
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| || || ||||| ||| || || | | || | | ||| ||||||| ||
Sbjct 1284 GATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAAC 1225
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767
||| | || | ||||||||||| | ||||| ||||| || ||||| ||
Sbjct 1224 CTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 1174
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
||||| || || || | || || || || |||||||| |||||| | ||||
Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || ||||| || || || |||||| | || || || || || ||||||||||||
Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| ||| ||| | | || | | |||| ||||||| ||||| | || | |
Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| ||||| || ||||| || || |||||
Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405
Score = 86.0 bits (94), Expect = 6e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
|||||||||||| ||||| ||| ||||||| || ||||| || || || || || || ||
Sbjct 2075 GTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATCCCCTCCTT 2016
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
||| ||| || || | | || | | ||| ||||||| ||||| | || |
Sbjct 2015 GTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTGAT 1956
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| ||||||||||| ||||| || || || ||||||
Sbjct 1955 AGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCATA 1919
>seq233574
Length=1449
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | ||| | ||| | ||| ||||| || || ||||| || ||
Sbjct 306 GCCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGA 247
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| || | |||||| | ||| ||||||||| |||||||||||||||| || || ||
Sbjct 246 CAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGG 187
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|||||||| ||||| ||| | || | || | | || | | ||| | |||||||
Sbjct 186 GATGCCTTCCTTGTC-CTGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCA 128
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| | || | |||||||| |||| ||| || ||||| || |||||
Sbjct 127 CCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
>seq154141
Length=2423
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | ||| | || | || ||||| || || ||||| || ||
Sbjct 306 GCCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGA 247
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| || | |||||| | ||| ||||||||| |||||||||||||||| || |||||
Sbjct 246 CAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGG 187
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||||| ||||| ||| || || | | || | | |||| | ||||||||
Sbjct 186 GATGCCTTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCAC 127
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | |||||||| |||| ||| || ||||| || |||||
Sbjct 126 CTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
>seq46948
Length=6204
Score = 105 bits (116), Expect = 7e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
||||| || || || | || ||||| ||||||||||| |||||| | || |
Sbjct 1285 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA 1226
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || || ||||| || || |||||| | || || || || || ||||||||||||
Sbjct 1225 TCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTG 1166
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| ||| ||| | | || | | |||| ||||||| ||||| | ||| | |
Sbjct 1165 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATC 1106
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||||| ||||| || ||||| || || ||||||
Sbjct 1105 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATA 1070
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
||||| || | ||| | || || || ||||||||||| || ||| | |||| |
Sbjct 1513 CGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCG 1454
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||||||||| ||||| ||| ||||||| || ||||| || || || || || || |||
Sbjct 1453 TCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 1394
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | | ||| ||||||| ||||| | || |
Sbjct 1393 TCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATA 1334
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||||| ||||| || || || || || ||||||
Sbjct 1333 GTCTTGCCCGTCAATGTCTTCACAAAGATCTGCATA 1298
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | ||||| |||| ||| | || || || ||||||||||| |||||
Sbjct 1069 CCGCCGCGGAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAA 1010
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||||| ||||| || ||| ||||||| || || || || || ||
Sbjct 1009 AGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGG 950
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | | ||| ||||||| |||
Sbjct 949 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACC 890
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767
|| | || | ||||||||||| | ||||| ||||| || ||||| ||
Sbjct 889 TCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 840
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||| || ||||| | |||||||| |||||||| || || ||
Sbjct 1753 CCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAG 1694
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||| |||||||| ||||| || |||||| | || || || || ||
Sbjct 1693 AGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 1634
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||||||||| ||| || ||| | | || | | |||| | ||||| |||
Sbjct 1633 ATGCCTTCTTTGTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACC 1574
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | || | || || || ||||| || || || || |||||||||
Sbjct 1573 TCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCATA 1526
>seq29733
Length=7895
Score = 105 bits (116), Expect = 7e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
|||||| || | ||||| || | ||| | || || || ||||||||||| ||||||
Sbjct 723 GCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGA 664
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| |||||||||||||| || ||| ||||||| || ||||| || || ||
Sbjct 663 AAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGG 604
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| || || ||||| ||| || || | | || | | ||| ||||||| ||
Sbjct 603 GATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAAC 544
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767
||| | || | ||||||||||| | ||||| ||||| || ||||| ||
Sbjct 543 CTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 493072758883200
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