Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq219432 178 2e-39 seq257780 163 4e-35 >seq219432 Length=1578 Score = 178 bits (196), Expect = 2e-39 Identities = 370/549 (67%), Gaps = 4/549 (1%) Strand=Plus/Minus Query 79840 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 ||||||| |||||| || |||||| || || |||||| ||| || || ||||| Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAACAGTCGAATAGACCTGGACAC 655 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 || | |||| ||| | | ||||| | | | | || ||| |||||| || ||| Sbjct 654 TCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGGTCA 595 Query 79960 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 80019 |||||||| ||||| || ||||| | |||||| || || || || || || Sbjct 594 GGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTTTTG 535 Query 80020 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 80079 || || | ||| || ||| || | ||||| ||||| | ||| || || | | Sbjct 534 CGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAGGCG 475 Query 80080 CCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 80139 || || ||||||||||| |||||||| | || | |||||||| || ||||| | | | Sbjct 474 CCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGGAGC 415 Query 80140 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 80199 ||||||| | ||| ||||| ||||| || || | ||| | | || || | Sbjct 414 ATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACCCTTGCTTCTG 355 Query 80200 ATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 80257 || | || ||| ||||| || || || || |||| || || | || || | | Sbjct 354 ATGCAATGAACGTTG--AGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACTGCT 297 Query 80258 TTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAG 80317 |||| |||||||| |||||||||||||| || || ||||| | || ||| |||| || | Sbjct 296 TTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAACTGG 237 Query 80318 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 80377 |||| ||| | | || |||| ||||| | ||| ||||| |||||||| ||||| | Sbjct 236 ACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACCACT 177 Query 80378 TTTCAGACA 80386 || | |||| Sbjct 176 TTCCGGACA 168 >seq257780 Length=1265 Score = 163 bits (180), Expect = 4e-35 Identities = 313/468 (67%), Gaps = 34/468 (7%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| | ||| ||||| || ||| || ||||| || | || |||||||| ||| Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | || ||||| || |||||||| || ||||| || ||||||||||| |||||| Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT- 50129 |||||||| | || ||||| || |||||||| || || | |||| | | ||| | Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGAAACGTGGATTTT 295 Query 50130 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 |||| |||||||| | ||||| || ||||||||||| ||||| || | |||| | Sbjct 294 GAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTGT 235 Query 50188 ATGGCATTAAAGAGATAGt--------------------tt-----------ttttCATT 50216 | || ||||||||| ||| || ||| | Sbjct 234 ACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGAT 175 Query 50217 ACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 50276 | ||| || | || || ||||| | ||| |||||| ||||| ||||| ||||| || Sbjct 174 AGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGAT 115 Query 50277 GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCG 50336 || || || ||||| ||||| || | ||| || | | || |||||| || || || Sbjct 114 TGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAACG 55 Query 50337 TTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384 ||| | | || || || ||||| ||||| || || |||||||| || Sbjct 54 TTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713937675049440