Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq219432 178 2e-39
seq257780 163 4e-35
>seq219432
Length=1578
Score = 178 bits (196), Expect = 2e-39
Identities = 370/549 (67%), Gaps = 4/549 (1%)
Strand=Plus/Minus
Query 79840 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899
||||||| |||||| || |||||| || || |||||| ||| || || |||||
Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAACAGTCGAATAGACCTGGACAC 655
Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959
|| | |||| ||| | | ||||| | | | | || ||| |||||| || |||
Sbjct 654 TCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGGTCA 595
Query 79960 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 80019
|||||||| ||||| || ||||| | |||||| || || || || || ||
Sbjct 594 GGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTTTTG 535
Query 80020 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 80079
|| || | ||| || ||| || | ||||| ||||| | ||| || || | |
Sbjct 534 CGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAGGCG 475
Query 80080 CCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 80139
|| || ||||||||||| |||||||| | || | |||||||| || ||||| | | |
Sbjct 474 CCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGGAGC 415
Query 80140 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 80199
||||||| | ||| ||||| ||||| || || | ||| | | || || |
Sbjct 414 ATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACCCTTGCTTCTG 355
Query 80200 ATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 80257
|| | || ||| ||||| || || || || |||| || || | || || | |
Sbjct 354 ATGCAATGAACGTTG--AGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACTGCT 297
Query 80258 TTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAG 80317
|||| |||||||| |||||||||||||| || || ||||| | || ||| |||| || |
Sbjct 296 TTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAACTGG 237
Query 80318 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 80377
|||| ||| | | || |||| ||||| | ||| ||||| |||||||| ||||| |
Sbjct 236 ACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACCACT 177
Query 80378 TTTCAGACA 80386
|| | ||||
Sbjct 176 TTCCGGACA 168
>seq257780
Length=1265
Score = 163 bits (180), Expect = 4e-35
Identities = 313/468 (67%), Gaps = 34/468 (7%)
Strand=Plus/Minus
Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
|||| | ||| ||||| || ||| || ||||| || | || |||||||| |||
Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070
|| || | || ||||| || |||||||| || ||||| || ||||||||||| ||||||
Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT- 50129
|||||||| | || ||||| || |||||||| || || | |||| | | ||| |
Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGAAACGTGGATTTT 295
Query 50130 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187
|||| |||||||| | ||||| || ||||||||||| ||||| || | |||| |
Sbjct 294 GAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTGT 235
Query 50188 ATGGCATTAAAGAGATAGt--------------------tt-----------ttttCATT 50216
| || ||||||||| ||| || ||| |
Sbjct 234 ACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGAT 175
Query 50217 ACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 50276
| ||| || | || || ||||| | ||| |||||| ||||| ||||| ||||| ||
Sbjct 174 AGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGAT 115
Query 50277 GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCG 50336
|| || || ||||| ||||| || | ||| || | | || |||||| || || ||
Sbjct 114 TGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAACG 55
Query 50337 TTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384
||| | | || || || ||||| ||||| || || |||||||| ||
Sbjct 54 TTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 713937675049440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |