Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 95.1 9e-15
seq21692 89.7 4e-13
>seq46948
Length=6204
Score = 95.1 bits (104), Expect = 9e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957
|| |||||||| | || ||||||||| | ||||||||||| | ||||| | ||
Sbjct 1282 AAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATCC 1223
Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017
|| | |||||||||||| || ||||| | |||||| || | ||| | |||||||| ||
Sbjct 1222 TCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCC 1163
Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077
|||| |||| || | ||| | ||||| | |||||| || | || || ||
Sbjct 1162 TGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGTC 1103
Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| || || | || || ||||| || |||||
Sbjct 1102 TTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
>seq21692
Length=9146
Score = 89.7 bits (98), Expect = 4e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||||||||| | ||| ||||| || | || || |||| || | |||||||| || ||
Sbjct 2893 CTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCGTCCTCGAGCTGTTTGCCAGCGAA 2834
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTC 43036
|| ||||||||||| || | ||| | ||| || || || ||| ||| | || ||
Sbjct 2833 GATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTTATC-CTGAATCTTGGCCTTCACAT 2775
Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096
| ||| || ||| || ||| || || | || ||||| || |||||||| ||||| |
Sbjct 2774 TCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGA 2715
Query 43097 CAAAAATTTGCAT 43109
|||| || |||||
Sbjct 2714 CAAATATCTGCAT 2702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379127451370968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |