Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq219432 185 1e-41 seq257780 152 7e-32 >seq219432 Length=1578 Score = 185 bits (204), Expect = 1e-41 Identities = 375/552 (68%), Gaps = 10/552 (2%) Strand=Plus/Minus Query 71923 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT---CCAGGA 71979 ||||||| |||||| || |||||| || || |||||| || ||| ||| || ||| Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAA-CA--GTCGAATAGACCTGGA 658 Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039 || |||| ||| ||| | | ||||| | | | | || ||| |||||| || Sbjct 657 CACTCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGG 598 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||||||||||| ||||| || ||||| | |||||| || || || || || Sbjct 597 TCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTT 538 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || || || | ||| || ||| || | ||||| ||||| | ||| || || | Sbjct 537 TTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAG 478 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || |||||||||||||| |||||||| | || | |||||||| || ||||| | Sbjct 477 GCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGG 418 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | |||||||| | ||| ||||| | ||||| || || | ||| | | || || Sbjct 417 AGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACCCTTGCTT 358 Query 72280 CGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 | || | || ||| ||||| || || || || |||| || || | || || Sbjct 357 CTGATGCAATGAACGTTG--AGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACT 300 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 | ||||| |||||||| ||||||||||| || || ||| ||||| | || ||| |||| | Sbjct 299 GCTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAAC 240 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 | ||||| ||| | | || |||| ||||| | ||| ||||| |||||||| |||| Sbjct 239 TGGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACC 180 Query 72458 ATTTTTCAGACA 72469 | ||| | |||| Sbjct 179 ACTTTCCGGACA 168 >seq257780 Length=1265 Score = 152 bits (168), Expect = 7e-32 Identities = 312/469 (67%), Gaps = 36/469 (8%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| | ||| ||||| || ||| || |||||||| | || |||| ||| ||| Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || | || ||||| || |||||||| || ||||| || || |||||||| || ||| Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 42234 |||||||| | || ||||| || |||||||| | || | |||| | ||| | | | Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGA-AACGTGGATTT 296 Query 42235 ---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 |||| |||||||| | ||||| || ||||||||||| ||||| || | |||| Sbjct 295 TGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTG 236 Query 42292 TATGGCATTAAAGAGATAGt--------------------tt-----------ttttCAT 42320 || || ||||||||| ||| || ||| Sbjct 235 TACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGA 176 Query 42321 TACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAA 42380 || ||| || | || || ||||| | ||| |||||| || || ||||| ||||| | Sbjct 175 TAGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGA 116 Query 42381 TGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATC 42440 | || || || ||||| ||||| || | || || | || ||||||||| || || | Sbjct 115 TTGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAAC 56 Query 42441 GTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 |||| | | || ||||| ||||| ||||| || || |||||||| || Sbjct 55 GTTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667092264180960