Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq257780 98.7 1e-15
seq219432 86.0 9e-12
>seq257780
Length=1265
Score = 98.7 bits (108), Expect = 1e-15
Identities = 178/258 (69%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390
|||||||||||| | | || | || | | | || |||||| | |||| | |
Sbjct 221 CTCTTTAACGCAGTACAAACCCTTCCCTGTGTGAAAAAGAAGGCTGACTGGGCACTCAAG 280
Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450
||||| | |||| || || ||| | || | ||||| || || || |||||||||
Sbjct 281 TGGATTGGTGACTCAAAATCCACGTTTCCAGAGCGCCTGGTAGCCTTTGCAGCCGTAGAG 340
Query 125451 GGCATCTTCTTTTC-GGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509
|| | |||||||| |||| | |||||| ||||||| ||||| |||||||| || || ||
Sbjct 341 GGGGTTTTCTTTTCTGGGTCG-TTTGCGTCCATCTTCTGGCTGAAGAAGCGTGGGCTTAT 399
Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569
||| || |||| ||| || || | ||| || || ||||| || ||| ||||||
Sbjct 400 GCCAGGGTTGACATTCAGCAATGAACTAATAAGCCGTGATGAGGGACTTCACACTGACTT 459
Query 125570 TGCCATTCTACTGTTTCG 125587
|| ||| ||||| ||
Sbjct 460 CGCTTGTCTTCTGTTCCG 477
>seq219432
Length=1578
Score = 86.0 bits (94), Expect = 9e-12
Identities = 164/242 (68%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
|||||||| || |||||||||||||| | || | ||| | ||||| |||||| | |||
Sbjct 452 CAGGGCGGAAACAAACGGCCAGGCGCCTTCGCGATTTACCTAGAACCATGGCACCCAGAC 511
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| | | ||| | ||| ||||||||||| ||||| |||||| | || | | ||
Sbjct 512 ATTCTGCAGTTTGTAGAGCTGCGCAAAAACACTGGCGCTGAAGAAACTAGAACTCGTGAT 571
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || | || |||||| | || || | || ||| |||||| | | | | | |
Sbjct 572 CTCTTCCACGCTCTCTGGATTCCTGACCTATTTATGCGACGCGTCCAAGCCAACGACAAG 631
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| |||||| || | || || ||||| | ||| || ||||| ||||| ||
Sbjct 632 TGGACTCTAATGGATCCTCATGAGTGTCCAGGTCTATTCGACTGTTGGGGTGAAGAATTC 691
Query 97116 GA 97117
||
Sbjct 692 GA 693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 736590650076960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |