Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq257780 98.7 1e-15 seq219432 86.0 9e-12 >seq257780 Length=1265 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 |||||||||||| | | || | || | | | || |||||| | |||| | | Sbjct 221 CTCTTTAACGCAGTACAAACCCTTCCCTGTGTGAAAAAGAAGGCTGACTGGGCACTCAAG 280 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||| | |||| || || ||| | || | ||||| || || || ||||||||| Sbjct 281 TGGATTGGTGACTCAAAATCCACGTTTCCAGAGCGCCTGGTAGCCTTTGCAGCCGTAGAG 340 Query 125451 GGCATCTTCTTTTC-GGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 || | |||||||| |||| | |||||| ||||||| ||||| |||||||| || || || Sbjct 341 GGGGTTTTCTTTTCTGGGTCG-TTTGCGTCCATCTTCTGGCTGAAGAAGCGTGGGCTTAT 399 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| || |||| ||| || || | ||| || || ||||| || ||| |||||| Sbjct 400 GCCAGGGTTGACATTCAGCAATGAACTAATAAGCCGTGATGAGGGACTTCACACTGACTT 459 Query 125570 TGCCATTCTACTGTTTCG 125587 || ||| ||||| || Sbjct 460 CGCTTGTCTTCTGTTCCG 477 >seq219432 Length=1578 Score = 86.0 bits (94), Expect = 9e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 |||||||| || |||||||||||||| | || | ||| | ||||| |||||| | ||| Sbjct 452 CAGGGCGGAAACAAACGGCCAGGCGCCTTCGCGATTTACCTAGAACCATGGCACCCAGAC 511 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || | | ||| | ||| ||||||||||| ||||| |||||| | || | | || Sbjct 512 ATTCTGCAGTTTGTAGAGCTGCGCAAAAACACTGGCGCTGAAGAAACTAGAACTCGTGAT 571 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || | || |||||| | || || | || ||| |||||| | | | | | | Sbjct 572 CTCTTCCACGCTCTCTGGATTCCTGACCTATTTATGCGACGCGTCCAAGCCAACGACAAG 631 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| |||||| || | || || ||||| | ||| || ||||| ||||| || Sbjct 632 TGGACTCTAATGGATCCTCATGAGTGTCCAGGTCTATTCGACTGTTGGGGTGAAGAATTC 691 Query 97116 GA 97117 || Sbjct 692 GA 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 736590650076960