Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 104 2e-17
seq46123 89.7 4e-13
>seq46948
Length=6204
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || ||||| ||||| || || ||||| |||||||||||| ||| | | | ||
Sbjct 1282 AAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATCC 1223
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| | ||||||||| ||| | ||||| | |||||||| || || |||||||||||
Sbjct 1222 TCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCC 1163
Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
|| |||||| || ||| | || || | ||||| || || || | |||||| ||
Sbjct 1162 TGGATCTTTGCT-TTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGT 1104
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||| || |||||||| || ||||||
Sbjct 1103 CTTGCCCGTCAAGGTCTTTACAAAGATCTGCATA 1070
>seq46123
Length=6266
Score = 89.7 bits (98), Expect = 4e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || ||||| ||||| || || || || |||||||||||| ||| | | | ||
Sbjct 1616 AAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCC 1557
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| | || ||||| ||| | ||||| | |||||||| ||| || |||||||||||
Sbjct 1556 TCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCC 1497
Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
|| |||||| || ||| | || || | ||||| || || || | ||||| ||
Sbjct 1496 TGGATCTTTGCT-TTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGT 1438
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || |||| || |||||||| || |||||
Sbjct 1437 CTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360049875594636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |