Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq46948 104 2e-17 seq46123 89.7 4e-13 >seq46948 Length=6204 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| ||||| || || ||||| |||||||||||| ||| | | | || Sbjct 1282 AAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATCC 1223 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||||||| ||| | ||||| | |||||||| || || ||||||||||| Sbjct 1222 TCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCC 1163 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || |||||| || ||| | || || | ||||| || || || | |||||| || Sbjct 1162 TGGATCTTTGCT-TTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGT 1104 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| || |||||||| || |||||| Sbjct 1103 CTTGCCCGTCAAGGTCTTTACAAAGATCTGCATA 1070 >seq46123 Length=6266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| ||||| || || || || |||||||||||| ||| | | | || Sbjct 1616 AAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCC 1557 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||| ||| | ||||| | |||||||| ||| || ||||||||||| Sbjct 1556 TCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCC 1497 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || |||||| || ||| | || || | ||||| || || || | ||||| || Sbjct 1496 TGGATCTTTGCT-TTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGT 1438 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||| || |||||||| || ||||| Sbjct 1437 CTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360049875594636