Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq46948 100 2e-16 >seq46948 Length=6204 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||||||||||||||| || | | || | ||||||| Sbjct 1736 CACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTC 1677 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| || | || | ||||| || ||| || | ||| |||||||| Sbjct 1676 GAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTG 1617 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| ||| || | | | | |||| |||||| || | ||||| ||||| Sbjct 1616 GATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTT 1557 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || || || ||||| |||||||| Sbjct 1556 ACCCGTCAATGTCTTCACAAAGATTTGCAT 1527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412135443076024