Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 109 5e-19
seq46123 96.9 3e-15
>seq46948
Length=6204
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055
||| |||||||| || || || || ||||| |||||||||||| | ||| |||
Sbjct 1283 CAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATC 1224
Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGT 20114
|| | ||||||||| || | || | ||||||||| || | |||| | |||||||||||
Sbjct 1223 CTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGG-ATGCCTTCTTTGT 1165
Query 20115 CGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGG 20174
| || ||| |||||| | ||| ||| |||| || || |||| |||||| |
Sbjct 1164 CCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCG 1105
Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
| ||||| ||||| || || ||||| || |||||
Sbjct 1104 TCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
>seq46123
Length=6266
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055
||| ||||||||||| || ||||| || || |||||||||||| | ||| |||
Sbjct 1617 CAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATC 1558
Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115
|| | || ||||| || | || | ||||||||| || || | ||||||||||||
Sbjct 1557 CTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTC 1498
Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175
|| ||| |||||| | ||| ||| |||| || || |||| ||||| ||
Sbjct 1497 CTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGT 1438
Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||| ||||| || || ||||| || |||||
Sbjct 1437 CTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 417120362409276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |