Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq46948 109 5e-19 seq46123 96.9 3e-15 >seq46948 Length=6204 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| || || || || ||||| |||||||||||| | ||| ||| Sbjct 1283 CAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATC 1224 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGT 20114 || | ||||||||| || | || | ||||||||| || | |||| | ||||||||||| Sbjct 1223 CTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGG-ATGCCTTCTTTGT 1165 Query 20115 CGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGG 20174 | || ||| |||||| | ||| ||| |||| || || |||| |||||| | Sbjct 1164 CCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCG 1105 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||||| ||||| || || ||||| || ||||| Sbjct 1104 TCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 >seq46123 Length=6266 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| ||||||||||| || ||||| || || |||||||||||| | ||| ||| Sbjct 1617 CAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATC 1558 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 || | || ||||| || | || | ||||||||| || || | |||||||||||| Sbjct 1557 CTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTC 1498 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || ||| |||||| | ||| ||| |||| || || |||| ||||| || Sbjct 1497 CTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGT 1438 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| || || ||||| || ||||| Sbjct 1437 CTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417120362409276