Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq257780 105 6e-18
>seq257780
Length=1265
Score = 105 bits (116), Expect = 6e-18
Identities = 398/621 (64%), Gaps = 49/621 (8%)
Strand=Plus/Minus
Query 13001 ATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTT 13060
|||||||| ||| | | |||||||| || || || | ||||| | ||| || ||
Sbjct 615 ATGTACTGGGCCATCAGACGGCAGTTCATGCCGATCAAGTCCACAGGAAGAGCGTCAGTC 556
Query 13061 AAAAAGtttttttCTATATCAACTGCTTCG---ATAACTATGTCTCTTATTACGTTCTCT 13117
| ||| | ||| |||||||| ||||| |||| || ||| | ||| |||
Sbjct 555 AGAAATTCCACTTCGATATCAACAGCTTCCCGCATAA-----TCGCTTCT-ACGCGCTCC 502
Query 13118 AATGGAGGATTTGATA--GATGCTTA--AACATCATACATGCAAAATCACAGTGCAATCC 13173
| |||| |||| | |||| | |||| | ||| || || ||| ||| | |||
Sbjct 501 T-TAGAGGGTTTGTTTCTGATGTGTCGGAACAGAAGACAAGCGAAGTCAGTGTGAAGTCC 443
Query 13174 TTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTT 13233
||||| | |||||||| || || ||||| | || ||||||||||| || || ||
Sbjct 442 CTCATCACGGCTTATTAGTTCATTGCTGAATGTCAACCCTGGCATAAGCCCACGCTTCTT 383
Query 13234 AATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293
| ||| || || | |||||||| || ||||| || | || || || |||||||| ||
Sbjct 382 CAGCCAGAAGATGGACGCAAACGACCCAGAAAAGAAAACCCCCTCTACGGCTGCAAAGGC 323
Query 13294 TATCAACCTTTCACCATACGTACTATTTTTACTCTCTA-TCCACTTTCTGGCCCAGTTTG 13352
|| || | || | |||| ||||| | || | | ||||||| ||||||| |
Sbjct 322 TACCAGGCGCTCTGGAAACGTGG-ATTTTGAGTCACCAATCCACTTGAGTGCCCAGTCAG 264
Query 13353 CTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA------------------ 13394
| || | ||| || ||| | ||| || ||||||||| |
Sbjct 263 CCTTCTTTTTCACACAGGGAAGGGTTTGTACTGCGTTAAAGAGAAAGTCGCTAAAAATAA 204
Query 13395 AATAAttttt-------------ttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441
||||| || ||| || || || || || || || | |
Sbjct 203 AATAAGAGTTAGAGGAAGTACCGTTCGATAGGATCCTTGATGTACGTGTCGATGAGGAGA 144
Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501
|||||| || || ||||||||||| || || |||||||| ||||| || || | |||
Sbjct 143 GAATACATCTCCGAGTGAATATTTTCGATTGCAATTTGGAATCCATAGAAGCAACGAGCT 84
Query 13502 TCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560
|| | || || ||||| || | ||| | ||| | | ||| ||||| |||||||||||
Sbjct 83 TCCGGGACTTGTACTTCTTGACTGAAA-CGTTCCACAAGGTTCTCGTTGACTATCCCGTC 25
Query 13561 ACTAGCAGCaaaaaaaGCAAG 13581
|| || |||||||| |||||
Sbjct 24 GCTTGCGGCAAAAAATGCAAG 4
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428448567735192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |