Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq257780 105 6e-18 >seq257780 Length=1265 Score = 105 bits (116), Expect = 6e-18 Identities = 398/621 (64%), Gaps = 49/621 (8%) Strand=Plus/Minus Query 13001 ATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTT 13060 |||||||| ||| | | |||||||| || || || | ||||| | ||| || || Sbjct 615 ATGTACTGGGCCATCAGACGGCAGTTCATGCCGATCAAGTCCACAGGAAGAGCGTCAGTC 556 Query 13061 AAAAAGtttttttCTATATCAACTGCTTCG---ATAACTATGTCTCTTATTACGTTCTCT 13117 | ||| | ||| |||||||| ||||| |||| || ||| | ||| ||| Sbjct 555 AGAAATTCCACTTCGATATCAACAGCTTCCCGCATAA-----TCGCTTCT-ACGCGCTCC 502 Query 13118 AATGGAGGATTTGATA--GATGCTTA--AACATCATACATGCAAAATCACAGTGCAATCC 13173 | |||| |||| | |||| | |||| | ||| || || ||| ||| | ||| Sbjct 501 T-TAGAGGGTTTGTTTCTGATGTGTCGGAACAGAAGACAAGCGAAGTCAGTGTGAAGTCC 443 Query 13174 TTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTT 13233 ||||| | |||||||| || || ||||| | || ||||||||||| || || || Sbjct 442 CTCATCACGGCTTATTAGTTCATTGCTGAATGTCAACCCTGGCATAAGCCCACGCTTCTT 383 Query 13234 AATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | ||| || || | |||||||| || ||||| || | || || || |||||||| || Sbjct 382 CAGCCAGAAGATGGACGCAAACGACCCAGAAAAGAAAACCCCCTCTACGGCTGCAAAGGC 323 Query 13294 TATCAACCTTTCACCATACGTACTATTTTTACTCTCTA-TCCACTTTCTGGCCCAGTTTG 13352 || || | || | |||| ||||| | || | | ||||||| ||||||| | Sbjct 322 TACCAGGCGCTCTGGAAACGTGG-ATTTTGAGTCACCAATCCACTTGAGTGCCCAGTCAG 264 Query 13353 CTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA------------------ 13394 | || | ||| || ||| | ||| || ||||||||| | Sbjct 263 CCTTCTTTTTCACACAGGGAAGGGTTTGTACTGCGTTAAAGAGAAAGTCGCTAAAAATAA 204 Query 13395 AATAAttttt-------------ttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 ||||| || ||| || || || || || || || | | Sbjct 203 AATAAGAGTTAGAGGAAGTACCGTTCGATAGGATCCTTGATGTACGTGTCGATGAGGAGA 144 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 |||||| || || ||||||||||| || || |||||||| ||||| || || | ||| Sbjct 143 GAATACATCTCCGAGTGAATATTTTCGATTGCAATTTGGAATCCATAGAAGCAACGAGCT 84 Query 13502 TCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 || | || || ||||| || | ||| | ||| | | ||| ||||| ||||||||||| Sbjct 83 TCCGGGACTTGTACTTCTTGACTGAAA-CGTTCCACAAGGTTCTCGTTGACTATCCCGTC 25 Query 13561 ACTAGCAGCaaaaaaaGCAAG 13581 || || |||||||| ||||| Sbjct 24 GCTTGCGGCAAAAAATGCAAG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428448567735192