Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq46948 143 6e-29 seq46123 143 6e-29 seq1202 136 9e-27 seq21692 132 1e-25 seq29733 129 1e-24 seq233574 123 6e-23 seq257780 113 1e-19 >seq46948 Length=6204 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 ||||| || || || ||||| || ||||| || || ||||| || || | || ||||| Sbjct 1051 ACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCG 992 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| || ||||| || || | |||||| || || || ||||| || || || || Sbjct 991 AGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGG 932 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || ||||| || | | || || || || ||||| || ||||||||||| Sbjct 931 ATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTG 872 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || || |||||||| Sbjct 871 CCGGTAAGGGTTTTAACGAAGATCTGCAT 843 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || || || || ||||| | || || || |||||||| || Sbjct 1267 GTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATCCTCAAGTTGTTTGCCG 1208 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | ||||||||| || || || || |||||||| ||||| ||||||||||| Sbjct 1207 GCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCCTGGATCTTTGCTTTC 1148 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | | ||||| || || ||||| || ||||| ||||| || || | || Sbjct 1147 ACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGTCTTGCCCGTCAAGGTC 1088 Query 104543 TTTACAAATATCTGCAT 104559 |||||||| |||||||| Sbjct 1087 TTTACAAAGATCTGCAT 1071 >seq46123 Length=6266 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||||| || ||||| |||||||| || || || || ||||| | || || || || || Sbjct 1608 ATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTCAAGCTG 1549 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 || || || || || | ||||||||| || || || || |||||||| ||||| ||||| Sbjct 1548 CTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTT 1489 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||| ||||| || | | ||||| || || ||||| || ||||| ||||| || || Sbjct 1488 TGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCCCGT 1429 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | || |||||||| |||||||| Sbjct 1428 CAAGGTCTTTACAAAGATCTGCAT 1405 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || || || || || |||||||| ||||| || || || || || || | || ||||| Sbjct 1385 ACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCG 1326 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || ||||| || ||||| || || | ||| || || || || ||||| || || || || Sbjct 1325 AGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGG 1266 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || ||||| || | | || || || || ||||| || ||||||||||| Sbjct 1265 ATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTG 1206 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || || |||||||| Sbjct 1205 CCGGTAAGGGTTTTAACGAAGATCTGCAT 1177 >seq1202 Length=22811 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || || || | || || || || || |||||||| || || ||||| | Sbjct 3819 AGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGT 3760 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || |||||||| ||||| || ||||| | |||||| || || || || || || Sbjct 3759 CCGTCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGGATACCCTCC 3700 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||||||||| || || ||||| || | | || ||| || | || || || Sbjct 3699 TTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAATTTCGAGGGTG 3640 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || || ||||| |||||||||||||| Sbjct 3639 ATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCAT 3602 >seq21692 Length=9146 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || || || | || || || || || |||||||| || || ||||| | Sbjct 2919 AGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGC 2860 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || ||||| ||||| || |||| | |||||| || || || || || || Sbjct 2859 CCGTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCC 2800 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||||||||| || || ||||| || | | || ||| || || || || || Sbjct 2799 TTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTG 2740 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || || ||||| |||||||||||||| Sbjct 2739 ATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCAT 2702 >seq29733 Length=7895 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || || || || || ||||| || ||||| || || || || || || | || ||||| Sbjct 704 ACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCG 645 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || ||||| || ||||| || |||| ||| || || || || ||||| || || || || Sbjct 644 AGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGG 585 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || ||||| || | | || || || || ||||| || ||||||||||| Sbjct 584 ATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTG 525 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || || |||||||| Sbjct 524 CCGGTAAGGGTTTTAACGAAGATCTGCAT 496 Score = 114 bits (126), Expect = 3e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 ||||||||| || || || || |||||||| ||||| ||||||||||| ||||| || | Sbjct 1250 CCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTTGCTTTCACATTCTCAAT 1191 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 | |||||||| || ||||| || |||||||| ||||| || | ||| || ||||| || Sbjct 1190 AGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGAT 1131 Query 104554 CTGCAT 104559 |||||| Sbjct 1130 CTGCAT 1125 >seq233574 Length=1449 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| || || || | |||||| Sbjct 291 AAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTC 232 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || || |||||||| || || | || || || || || || ||||| || || Sbjct 231 TTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTC 172 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | | || || || || |||||||| || || || Sbjct 171 CTGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGT 112 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || || |||||||| Sbjct 111 CTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79 >seq257780 Length=1265 Score = 113 bits (124), Expect = 1e-19 Identities = 386/597 (65%), Gaps = 45/597 (8%) Strand=Plus/Plus Query 268854 TTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 ||||||| |||||||| | || || || || || ||||| || || || || ||| Sbjct 2 TTCTTGCATTTTTTGCCGCAAGCGACGGGATAGTCAACGAGAACCTTGTGGAACGTTTCA 61 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 ||||||| ||||| | || ||||| | || || || |||||||| || || || |||| Sbjct 62 GTCAAGAAGTACAAGTCCCGGAAGCTCGTTGCTTCTATGGATTCCAAATTGCAATCGAAA 121 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAA 269033 ||||||| || |||||||| ||| | || || || || || | ||| | |||| Sbjct 122 ATATTCACTCGGAGATGTATTCTCTCCTCATCGACACGTACATCAAGGATCCTATCGAAC 181 Query 269034 AGAA--------AAGACT------ATTTTC-------TTCTATG------AGAACTA--- 269063 | | || || ||||| |||| | || || | Sbjct 182 GGTACTTCCTCTAACTCTTATTTTATTTTTAGCGACTTTCTCTTTAACGCAGTACAAACC 241 Query 269064 -TGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT-----AAACGATAGCG 269117 | |||||||| ||| || |||| ||||| || || ||||| | | | | | Sbjct 242 CTTCCCTGTGTGAAAAAGAAGGCTGACTGGGCACTCAAGTGGATTGGTGACTCAAAATC- 300 Query 269118 CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT 269177 | | || | ||| | | || || ||||| || ||||| || | |||||||| |||| Sbjct 301 CACGTTTCC-AGAGCGCCTGGTAGCCTTTGCAGCCGTAGAGGGGGTTTTCTTTTCTGGGT 359 Query 269178 CTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTA 269237 | ||||| | ||||| ||| ||||||| | || ||||||||||| || || ||| | Sbjct 360 CGTTTGCGTCCATCTTCTGGCTGAAGAAGCGTGGGCTTATGCCAGGGTTGACATTCAGCA 419 Query 269238 ACGAATTGATAAGCAGGGACGAAGG--TTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295 | ||| | |||||| | || || || || ||||| |||||||||||| | | || | Sbjct 420 ATGAACTAATAAGCCGTGATGAGGGACTTCACACT--GACTTCGCTTGTCT-TCTGTTCC 476 Query 269296 TAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGT 269355 | ||| | ||||||| ||| | || | ||| | | ||||| |||||| Sbjct 477 GACACATC--AGAAACAAACCCTCTAAGGAGCGCGTAGAAGCGATTATGCGGGAAGCTGT 534 Query 269356 TTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAA 269412 | | | ||| |||||||| || || ||||| || | || | ||||| ||||| Sbjct 535 TGATATCGAAGTGGAATTTCTGACTGACGCTCTTCCTGTGGACTTGATCGGCATGAA 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144281953348368