Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq55520 84.2 1e-11 >seq55520 Length=5610 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||||||| ||||| || || ||||||| ||||| ||||||||||||||||||||| Sbjct 2947 AAAATCAA--TGGCCAGAGAGGGGCTCGAACCCTCGACATTCGCGTTATTAGCACGACGC 3004 Query 11506 TCTRACCAACTGAGCTA 11522 ||| ||| ||||||||| Sbjct 3005 TCTAACCGACTGAGCTA 3021 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || ||| ||||||| ||||| |||||||||||||||||||||||| ||| || Sbjct 1687 TGGCCAGAGAGAGGCTCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAACCGAC 1746 Query 11516 TGAGCTA 11522 ||||||| Sbjct 1747 TGAGCTA 1753 Lambda K H 0.640 0.410 0.922 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 259953840610096