Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq46123 113 4e-20 seq29733 113 4e-20 seq46948 109 5e-19 seq233574 86.0 6e-12 >seq46123 Length=6266 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||| |||| |||||| || ||||| ||||| | ||| |||||| | ||| | Sbjct 1392 TCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCC 1333 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || |||||||| ||| ||||||| | || ||||| ||||| || || || || || Sbjct 1332 ATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTT 1273 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || ||| | |||| | | || || || | || || Sbjct 1272 GTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAAT 1213 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || ||||| ||||| || |||||||||||| Sbjct 1212 AGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 1176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| || | || |||||||| || | ||| |||||| | |||| | | Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| || || || || || || || || ||||||||| Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||||| || || | | || ||| | | ||||| || | || || Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | || || |||||||||||||||| Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATGC 1403 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || ||| ||||||| | || ||||| ||||| || || || || ||| Sbjct 2074 TCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATCCCCTCCTTG 2015 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || ||| | |||| | | || || || | ||||| Sbjct 2014 TCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTGATA 1955 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || | |||||||||||||||||||| Sbjct 1954 GTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920 >seq29733 Length=7895 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||| |||| |||||| || ||||||||||| | ||| |||||| | ||| | Sbjct 711 TCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCC 652 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || |||||||| ||| ||||||| | | ||||| ||||| || || || || || Sbjct 651 ATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTT 592 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || ||| | |||| | | || || || | || || Sbjct 591 GTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAAT 532 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || ||||| ||||| || |||||||||||| Sbjct 531 AGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 495 >seq46948 Length=6204 Score = 109 bits (120), Expect = 5e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||| |||| |||||| || ||||||||||| | ||| || ||| | || || || Sbjct 1514 TCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGG--AGAGGGTGCGA 1457 Query 94852 A--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 || || ||||| || ||| ||||||| | || ||||| ||||| || || || || Sbjct 1456 CCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCC 1397 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | || || ||||| ||| ||| | |||| | | ||||| || | ||| Sbjct 1396 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGAGTG 1337 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || | || ||||||||||||||||| Sbjct 1336 ATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||| || | |||||| || ||||||||||| | ||| ||||| | ||| | Sbjct 1058 TCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCC 999 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || ||||| ||| ||||||| | || || || ||||| || || || || || Sbjct 998 ATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTT 939 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || ||| | |||| | | || || || | || || Sbjct 938 GTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAAT 879 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || ||||| ||||| || |||||||||||| Sbjct 878 AGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 842 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| |||| || || |||||||| | ||| |||||| | ||| | | Sbjct 1285 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA 1226 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || ||||| ||| | ||||| || || || || || || || || ||||||||| Sbjct 1225 TCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTG 1166 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||||| || || | | || ||| | | ||||| || | || || Sbjct 1165 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATC 1106 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || || |||||||||||||| Sbjct 1105 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 >seq233574 Length=1449 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 |||| ||||| || || ||||| || | ||| || || | | || || || || | Sbjct 287 ACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTC--TGACAGCGTACGACCGTCTT 230 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||| || || ||||||| | | |||||| ||||| || || ||||| ||||| | Sbjct 229 CCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCT 170 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || ||||| || | | | |||| | || || || | ||| ||||| | Sbjct 169 GAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTCT 110 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | ||||| || || ||||| ||||||||||||| Sbjct 109 TGCCAGTCAGCGTCTTCACGAAGATCTGCATGC 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445588026478560