Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq46123 113 4e-20
seq29733 113 4e-20
seq46948 109 5e-19
seq233574 86.0 6e-12
>seq46123
Length=6266
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|||||| |||| |||||| || ||||| ||||| | ||| |||||| | ||| |
Sbjct 1392 TCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCC 1333
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || |||||||| ||| ||||||| | || ||||| ||||| || || || || ||
Sbjct 1332 ATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTT 1273
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || ||||| || ||| | |||| | | || || || | || ||
Sbjct 1272 GTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAAT 1213
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || || ||||| ||||| || ||||||||||||
Sbjct 1212 AGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 1176
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
||||| ||||| || | || |||||||| || | ||| |||||| | |||| | |
Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || || | ||||| || || || || || || || || |||||||||
Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || ||||| || || | | || ||| | | ||||| || | || ||
Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || || | || || ||||||||||||||||
Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATGC 1403
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| || ||||| || ||| ||||||| | || ||||| ||||| || || || || |||
Sbjct 2074 TCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATCCCCTCCTTG 2015
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| || ||| | |||| | | || || || | |||||
Sbjct 2014 TCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTGATA 1955
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || | ||||||||||||||||||||
Sbjct 1954 GTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920
>seq29733
Length=7895
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|||||| |||| |||||| || ||||||||||| | ||| |||||| | ||| |
Sbjct 711 TCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCC 652
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || |||||||| ||| ||||||| | | ||||| ||||| || || || || ||
Sbjct 651 ATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTT 592
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || ||||| || ||| | |||| | | || || || | || ||
Sbjct 591 GTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAAT 532
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || || ||||| ||||| || ||||||||||||
Sbjct 531 AGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 495
>seq46948
Length=6204
Score = 109 bits (120), Expect = 5e-19
Identities = 156/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|||||| |||| |||||| || ||||||||||| | ||| || ||| | || || ||
Sbjct 1514 TCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGG--AGAGGGTGCGA 1457
Query 94852 A--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909
|| || ||||| || ||| ||||||| | || ||||| ||||| || || || ||
Sbjct 1456 CCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCC 1397
Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969
||||| | || || ||||| ||| ||| | |||| | | ||||| || | |||
Sbjct 1396 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGAGTG 1337
Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || | || |||||||||||||||||
Sbjct 1336 ATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299
Score = 98.7 bits (108), Expect = 9e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|||||| || | |||||| || ||||||||||| | ||| ||||| | ||| |
Sbjct 1058 TCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCC 999
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || || ||||| ||| ||||||| | || || || ||||| || || || || ||
Sbjct 998 ATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTT 939
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || ||||| || ||| | |||| | | || || || | || ||
Sbjct 938 GTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAAT 879
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || || ||||| ||||| || ||||||||||||
Sbjct 878 AGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 842
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
||||| ||||| |||| || || |||||||| | ||| |||||| | ||| | |
Sbjct 1285 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA 1226
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| || ||||| ||| | ||||| || || || || || || || || |||||||||
Sbjct 1225 TCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTG 1166
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || ||||| || || | | || ||| | | ||||| || | || ||
Sbjct 1165 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATC 1106
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || | || || ||||||||||||||
Sbjct 1105 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
>seq233574
Length=1449
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856
|||| ||||| || || ||||| || | ||| || || | | || || || || |
Sbjct 287 ACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTC--TGACAGCGTACGACCGTCTT 230
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
||| ||| || || ||||||| | | |||||| ||||| || || ||||| ||||| |
Sbjct 229 CCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCT 170
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
||| || ||||| || | | | |||| | || || || | ||| ||||| |
Sbjct 169 GAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTCT 110
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
| ||||| || || ||||| |||||||||||||
Sbjct 109 TGCCAGTCAGCGTCTTCACGAAGATCTGCATGC 77
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445588026478560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |