Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq303756 214 3e-51
seq151470 127 3e-25
seq23474 127 3e-25
>seq303756
Length=999
Score = 214 bits (236), Expect = 3e-51
Identities = 208/268 (78%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||||| ||| || || ||||||||||| ||||||||||| || |||
Sbjct 412 GCCAAGCGTCATCGCAAGGTTCTGCGTGACAACATCCAAGGCATCACCAAGCCTGCCATC 471
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || ||||||||||| || ||||| ||||||| | |||| || ||||
Sbjct 472 CGTCGTCTTGCACGTCGTGGTGGTGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGACC 531
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | |||| | ||| ||||||| ||| ||| |||| |||||| || || ||||||
Sbjct 532 CGCGGTGTTCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACATACACCGAG 591
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || || || ||||| |||||| ||||||| |||| ||||| ||||| |||||||||
Sbjct 592 CATGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTTTATGCCTTGAAGCGTCAAGGC 651
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
|| | | || |||||||| ||||||
Sbjct 652 CGCACCCTCTACGGTTTTGGTGGTTAAT 679
>seq151470
Length=2470
Score = 127 bits (140), Expect = 3e-25
Identities = 184/260 (71%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||| | | | || ||||||||||||||||||||||||||||| ||
Sbjct 1656 GCAAAGCGCCATCGGAAGGTTTTGCGTGATAACATCCAAGGAATCACCAAGCCAGCCATT 1715
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| || || ||||| || || || || |||||| | || || | | || ||||| |
Sbjct 1716 AGACGACTTGCTCGCCGAGGAGGCGTGAAGCGTATATCGGGCCTTATATACGAAGAAACG 1775
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| |||| | ||||| ||| ||||| | |||||| | ||||| ||
Sbjct 1776 CGCGGAGTTCTGAAAGTATTCCTGGAGAATGTTATTCGCGATGCTGTAACGTATACTGAA 1835
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || || | ||||||||||| | |||||| | || || || | ||||| |||||
Sbjct 1836 CATGCCAAGAGGAAGACTGTCACAGCTATGGATGTGGTTTACGCTCTTAAACGCCAAGGA 1895
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|||| |||| ||||| ||
Sbjct 1896 CGTACCCTTTACGGTTTCGG 1915
>seq23474
Length=8833
Score = 127 bits (140), Expect = 3e-25
Identities = 184/260 (71%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||| | | | || ||||||||||||||||||||||||||||| ||
Sbjct 7491 GCAAAGCGCCATCGGAAGGTTTTGCGTGATAACATCCAAGGAATCACCAAGCCAGCCATT 7550
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| || || ||||| || || || || |||||| | || || | | || ||||| |
Sbjct 7551 AGACGACTTGCTCGCCGAGGAGGCGTGAAGCGTATATCGGGCCTTATATACGAAGAAACG 7610
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| |||| | ||||| ||| ||||| | |||||| | ||||| ||
Sbjct 7611 CGCGGAGTTCTGAAAGTATTCCTGGAGAATGTTATTCGCGATGCTGTAACGTATACTGAA 7670
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || || | ||||||||||| | |||||| | || || || | ||||| |||||
Sbjct 7671 CATGCCAAGAGGAAGACTGTCACAGCTATGGATGTGGTTTACGCTCTTAAACGCCAAGGA 7730
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|||| |||| ||||| ||
Sbjct 7731 CGTACCCTTTACGGTTTCGG 7750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78634141960428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |