Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq303756 214 3e-51 seq151470 127 3e-25 seq23474 127 3e-25 >seq303756 Length=999 Score = 214 bits (236), Expect = 3e-51 Identities = 208/268 (78%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| ||| || || ||||||||||| ||||||||||| || ||| Sbjct 412 GCCAAGCGTCATCGCAAGGTTCTGCGTGACAACATCCAAGGCATCACCAAGCCTGCCATC 471 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || ||||| ||||||| | |||| || |||| Sbjct 472 CGTCGTCTTGCACGTCGTGGTGGTGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGACC 531 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | ||| ||||||| ||| ||| |||| |||||| || || |||||| Sbjct 532 CGCGGTGTTCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACATACACCGAG 591 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || ||||| |||||| ||||||| |||| ||||| ||||| ||||||||| Sbjct 592 CATGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTTTATGCCTTGAAGCGTCAAGGC 651 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || |||||||| |||||| Sbjct 652 CGCACCCTCTACGGTTTTGGTGGTTAAT 679 >seq151470 Length=2470 Score = 127 bits (140), Expect = 3e-25 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | | || ||||||||||||||||||||||||||||| || Sbjct 1656 GCAAAGCGCCATCGGAAGGTTTTGCGTGATAACATCCAAGGAATCACCAAGCCAGCCATT 1715 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | || || ||||| || || || || |||||| | || || | | || ||||| | Sbjct 1716 AGACGACTTGCTCGCCGAGGAGGCGTGAAGCGTATATCGGGCCTTATATACGAAGAAACG 1775 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||| | ||||| ||| ||||| | |||||| | ||||| || Sbjct 1776 CGCGGAGTTCTGAAAGTATTCCTGGAGAATGTTATTCGCGATGCTGTAACGTATACTGAA 1835 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||||||||| | |||||| | || || || | ||||| ||||| Sbjct 1836 CATGCCAAGAGGAAGACTGTCACAGCTATGGATGTGGTTTACGCTCTTAAACGCCAAGGA 1895 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| |||| ||||| || Sbjct 1896 CGTACCCTTTACGGTTTCGG 1915 >seq23474 Length=8833 Score = 127 bits (140), Expect = 3e-25 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | | || ||||||||||||||||||||||||||||| || Sbjct 7491 GCAAAGCGCCATCGGAAGGTTTTGCGTGATAACATCCAAGGAATCACCAAGCCAGCCATT 7550 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | || || ||||| || || || || |||||| | || || | | || ||||| | Sbjct 7551 AGACGACTTGCTCGCCGAGGAGGCGTGAAGCGTATATCGGGCCTTATATACGAAGAAACG 7610 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||| | ||||| ||| ||||| | |||||| | ||||| || Sbjct 7611 CGCGGAGTTCTGAAAGTATTCCTGGAGAATGTTATTCGCGATGCTGTAACGTATACTGAA 7670 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||||||||| | |||||| | || || || | ||||| ||||| Sbjct 7671 CATGCCAAGAGGAAGACTGTCACAGCTATGGATGTGGTTTACGCTCTTAAACGCCAAGGA 7730 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| |||| ||||| || Sbjct 7731 CGTACCCTTTACGGTTTCGG 7750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78634141960428