Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq219432 181 1e-40
seq257780 149 8e-31
>seq219432
Length=1578
Score = 181 bits (200), Expect = 1e-40
Identities = 370/545 (68%), Gaps = 10/545 (2%)
Strand=Plus/Minus
Query 63117 TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT---CCAGGA 63173
|||||| ||||||||| |||||| || || |||||| || ||| ||| || |||
Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAA-CA--GTCGAATAGACCTGGA 658
Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233
|| |||| ||| ||| | | ||||| ||| | | || ||| |||||| ||
Sbjct 657 CACTCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGG 598
Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293
||||||||||| ||||| || ||||| | |||||| ||| || || || ||
Sbjct 597 TCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTT 538
Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353
|| || || | ||| || ||| || | ||||| ||||| | ||| || || |
Sbjct 537 TTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAG 478
Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413
| || |||||||||||||| |||||||| | || | |||||||| || ||||| |
Sbjct 477 GCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGG 418
Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473
| |||||||| | |||||| || ||||| ||||| | ||| | | || ||
Sbjct 417 AGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACCCTTGCTT 358
Query 63474 CGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531
| || | || ||| ||||| || || || || |||| || || | || ||
Sbjct 357 CTGATGCAATGAACGTTG--AGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACT 300
Query 63532 GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGC 63591
| ||||| || ||||| || ||||||||||| || || ||||| | || ||| |||| |
Sbjct 299 GCTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAAC 240
Query 63592 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63651
| ||||| ||| | | || |||| ||||| | ||| ||||| |||||||| ||||
Sbjct 239 TGGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACC 180
Query 63652 ATTTT 63656
| |||
Sbjct 179 ACTTT 175
>seq257780
Length=1265
Score = 149 bits (164), Expect = 8e-31
Identities = 310/468 (66%), Gaps = 34/468 (7%)
Strand=Plus/Minus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| | ||| ||||| || ||| || ||||| || | || |||||||| |||
Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || | || ||||| || |||||||| || ||||| || ||||| || || || |||
Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33473
|||||||| | || ||||| || |||||||| | || | |||| | | || |
Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGAAACGTGGATTTT 295
Query 33474 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531
|||| |||||||| | ||||| || ||||||||||| ||||| || | |||| |
Sbjct 294 GAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTGT 235
Query 33532 ATGGCATTAAAGAGATAGt--------------------tt-----------ttttCATT 33560
| || ||||||||| ||| || ||| |
Sbjct 234 ACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGAT 175
Query 33561 ACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 33620
| ||| || | || || ||||| | ||| |||||| ||||| ||||| ||||| ||
Sbjct 174 AGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGAT 115
Query 33621 GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCG 33680
|| || || ||||| ||||| || | ||| || | | ||||||||| || || ||
Sbjct 114 TGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAACG 55
Query 33681 TTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728
|||| | | || || || ||||| ||||| || || |||||||| ||
Sbjct 54 TTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 619190859531360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |