Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq219432 147 6e-30 >seq219432 Length=1578 Score = 147 bits (162), Expect = 6e-30 Identities = 404/602 (67%), Gaps = 38/602 (6%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| | ||||| ||| || | || || | | || |||||||| | Sbjct 182 TTCACGCACGCATCTCCAACCCTGTTTAACTCGGGGACCCCTTTGCCCCAGATGTCCAGT 241 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || | |||||| | ||||||||||| ||| ||||| || | ||| ||| | ||| | Sbjct 242 TGTTATCTTCTCACCATGAAGGACGACAGCATAGAGGGCATTTATGATACATTAAAGCAG 301 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGT-GC 363725 ||||| ||||| ||||| ||||| ||||| || ||| | ||| |||| | || Sbjct 302 TGTGCGCTTATATCCAAAAATGCTGGCGGCATCGGTCT---------CAACGTTCATTGC 352 Query 363726 A-CAGAA-CA--GTTACATTC---GCGGC-ACAGGGGGATACTCGAATGGGCTGGTTCCC 363777 | ||||| || | ||| || |||| ||| ||| | || || || ||||||| Sbjct 353 ATCAGAAGCAAGGGTACTTTTATAGCGGGTACAAATGGAGAGTCCAACGGTTTGGTTCCA 412 Query 363778 ATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAA 363837 ||||| || || | |||| || || |||| || || ||||| ||| || || | Sbjct 413 ATGCTCCGCGTTTACAACAACACCGCCCGGTATGTTGATCAGGGCGGAAACAAACGGCCA 472 Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 || || || || || || || || || || | || ||| | ||||| | ||||| Sbjct 473 GGCGCCTTCGCGATTTACCTAGAACCATGGCACCCAGACATTCTGCAGTTTGTAGAGCTG 532 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 || |||||||| || || ||| | | |||||||| ||| | || || ||| || Sbjct 533 CGCAAAAACACTGGCGCTGAAGAAACTAGAACTCGTGATCTCTTCCACGCTCTCTGGATT 592 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGC--CCAC 364015 |||||| |||||| ||||| | || | || ||| ||||| || || | Sbjct 593 CCTGACCTATTTATGCGACGCGTCCAAGCCAACGACAAGTGG--ACTCTAATGGATCCTC 650 Query 364016 ACGAATGTCCAGGTCTTTCCGA-TGTATGGGGTGACGACT-----ATGTTGCTCTATACG 364069 | || ||||||||||| | ||| ||| |||||||| || | | |||| ||||| Sbjct 651 ATGAGTGTCCAGGTCTATTCGACTGT-TGGGGTGAAGAATTCGAAAAGTTG---TATAC- 705 Query 364070 AAAAGTATGAATCGG-AGGGAAAGGCTCGTAAGACAATTCCCGCAC-AGAAGCTATGGTT 364127 ||| || || |||| |||||||||| || ||||| |||| || | ||||| | |||| Sbjct 706 -AAAATACGAGTCGGAAGGGAAAGGC-CGCAAGACTCTTCCAGCCCAAGAAG-TGTGGTA 762 Query 364128 TG 364129 || Sbjct 763 TG 764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1295297964033672