Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq46948 125 6e-24 seq46123 116 3e-21 >seq46948 Length=6204 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || || || || || |||||||| | || |||||| ||| | Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | || ||| |||||| |||||||||||||| || || || ||| Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCGCCGGACCAA 1190 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || |||||| ||||| || |||| | | | | |||||| ||| Sbjct 1191 CAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAAC 1250 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||| || || || | ||||| || || Sbjct 1251 ATTCAAAAGGAGTCAACCCTGCATTTGGTCTT 1282 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||||| || || ||| | ||||| | || |||||| | | | Sbjct 1527 ATGCAAATCTTTGTGAAGACATTGACGGGTAAAACTATTACTCTGGAGGTCGAGCCTAGC 1586 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||| ||| | || ||| ||||| |||||||||||||| || || || ||| Sbjct 1587 GACTCCATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1646 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||| ||||| || | | | | || || || || Sbjct 1647 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACGCTCTCAGACTACAAT 1706 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || |||||| | || || ||| Sbjct 1707 ATTCAAAAGGAGTCTACACTGCACTTGGTG 1736 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | ||||| | || || ||| ||| Sbjct 843 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 902 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | |||||| | || || ||||| ||||| || || || || || || ||| Sbjct 903 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 962 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||| | | |||||| ||||||||||||| | | | | | ||||| ||| Sbjct 963 CAGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTACAAC 1022 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| ||||| || Sbjct 1023 ATTCAAAAGGAATCAAC 1039 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || || || | || || | || |||||| ||| Sbjct 1299 ATGCAGATCTTTGTGAAGACATTGACGGGCAAGACTATCACTCTGGAGGTCGAGCCCAGT 1358 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | |||||| | || || ||||| ||||| || || || || || || || Sbjct 1359 GACTCGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAG 1418 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||| | | ||| ||||| |||||||| | | | | || ||| || ||| Sbjct 1419 CAGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCTCTCCGACTACAAC 1478 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| ||||| || Sbjct 1479 ATTCAAAAGGAATCAAC 1495 >seq46123 Length=6266 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || || || || || ||||||| | || |||||| ||| | Sbjct 1405 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACTCTGGAGGTCGAGCCCAGC 1464 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | || ||| |||||| |||||||||||||| || || || ||| Sbjct 1465 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1524 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || |||||||| || || |||| | | | | |||||| ||| Sbjct 1525 CAGAGGTTGATCTTCGCAGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGATTACAAC 1584 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| || ||||| || | ||||| || || Sbjct 1585 ATTCAGAAGGAATCGACCCTACATTTGGTCTT 1616 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | ||||| | || || ||| ||| Sbjct 1177 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 1236 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | |||||| | || || ||||| ||||| || || || || || || || Sbjct 1237 GACTCGATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAG 1296 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||| | | |||||| || |||||||||| | | | | | |||||| ||| Sbjct 1297 CAGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAAC 1356 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||||||||| || Sbjct 1357 ATTCAAAAAGAATCAAC 1373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427408319731380