Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 111 1e-19
seq1202 95.1 1e-14
seq154141 89.7 4e-13
seq233574 86.0 5e-12
>seq46948
Length=6204
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | || |||| |||||| || ||||||||||| |||||||| ||||
Sbjct 1297 CCACCGCGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAA 1238
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | ||||| | ||||||||| || | || | || |||||||||| ||
Sbjct 1237 AGAGTACGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGG 1178
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| |||||||| || |||||| ||||| | | | || ||||| ||||||
Sbjct 1177 ATGCCTTCTTTGTCCTGGATCTTTGCT--TTCACATTCTCAATAGAGTCGCTGGGCTCGA 1120
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||| || || || || |||| || || ||||| ||||||||
Sbjct 1119 CCTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
Score = 82.4 bits (90), Expect = 6e-11
Identities = 159/233 (68%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 16705 TTACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTC 16764
||| || || || || | ||| |||| ||||| || ||||||||||| || ||||||||
Sbjct 1757 TTATCCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTC 1698
Query 16765 GGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824
| | || | ||||||| | || || || || | || | || ||||||||||
Sbjct 1697 TGAGAGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGG 1638
Query 16825 AGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882
|| | ||| |||||||| || || ||| ||||| | | | | ||||| |||
Sbjct 1637 TGGGATGCCTTCTTTGTCCTGGATCTTCGCT--TTCACATTCTCAATGGAGTCGCTAGGC 1580
Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| |||| || || ||||| || |||| || || ||||| || |||||
Sbjct 1579 TCGACCTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527
>seq1202
Length=22811
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || |||| ||| |||| ||||| || ||||||||||| || || || || |
Sbjct 3828 CCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAG 3769
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || ||||||| | ||||||||| || | || || ||||||||||| ||
Sbjct 3768 AGAGTGCGTCCGTCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGG 3709
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| || || ||| | |||||| | | | | ||| ||||| ||
Sbjct 3708 ATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAATT 3649
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||| || || ||||| || ||||||||||| ||||||||
Sbjct 3648 TCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCAT 3602
>seq154141
Length=2423
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| |||||| || |||||||| || ||||||||||| | || || ||||
Sbjct 290 AGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCT 231
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
||||| || || || ||| | || || || || ||||| ||| | ||| || |||||
Sbjct 230 TCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCC 171
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | | |||||| | | | | ||||| |||||| || | || |||||
Sbjct 170 TGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTC 111
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || |||||||| || || || ||||||||
Sbjct 110 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
>seq233574
Length=1449
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| |||||||| |||||||| || ||||||||||| | || || ||||
Sbjct 290 AGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCT 231
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
||||| || || || ||| | || || || || ||||| || | ||| || |||||
Sbjct 230 TCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 171
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | | |||||| | | | | ||| | |||||| || | || |||||
Sbjct 170 TGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTC 111
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || |||||||| || || || ||||||||
Sbjct 110 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402706406124040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |