Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq414596 122 6e-23
seq50752 122 6e-23
seq209436 118 7e-22
seq46948 116 2e-21
seq414668 113 3e-20
seq17645 109 4e-19
seq233574 98.7 7e-16
seq1202 98.7 7e-16
seq154141 95.1 8e-15
seq48829 93.3 3e-14
seq21692 89.7 3e-13
seq46123 87.8 1e-12
seq58355 86.0 4e-12
seq348146 82.4 5e-11
seq347894 82.4 5e-11
seq29733 82.4 5e-11
>seq414596
Length=642
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 561 AAGCCCGTTCCGTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 502
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||||| ||||||||||||||| ||||||||||||
Sbjct 501 GAATCCATTCATGCGCGTCACTTATTAGATGACGA 467
>seq50752
Length=5925
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 5348 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 5289
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| | ||||| ||||||||||||| ||||||||
Sbjct 5288 TAATTCATTCATCCGCGTCACTAATTCGATGACGA 5254
>seq209436
Length=1675
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1441 AAGCCCGTTCCGTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 1382
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||||||||||||| ||||||| ||||||||| ||
Sbjct 1381 GAATCCTTTCATGCACGTCACTTATTAGATGAGGA 1347
>seq46948
Length=6204
Score = 116 bits (128), Expect = 2e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||||| |||||||| || || |||||||||||| |||||||| |
Sbjct 1299 TACCACCGCGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGG 1240
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | ||| | || || | |||||| ||||| || || | | ||||| || | |
Sbjct 1239 AAAGAGTACGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCG 1180
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||||||||||| || ||| |||||||||| | || || | || |
Sbjct 1179 GGATGCCTTCTTTGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGA 1120
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | ||||| || || ||||||||||| || || || ||||||||
Sbjct 1119 CCTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
Score = 104 bits (114), Expect = 2e-17
Identities = 163/232 (70%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 38087 ATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||||| |||||| || || || |||||||||||||||||| |
Sbjct 1758 ATTATCCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGT 1699
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| || | || |||| || | || || ||||| || || | | ||||| || |
Sbjct 1698 CTGAGAGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCG 1639
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|||| ||||||||||||| || || |||||||||| | | || | | |
Sbjct 1638 GTGGGATGCCTTCTTTGTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCT 1579
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || | |||||||||||||||||||| || ||||| || || |||||
Sbjct 1578 CGACCTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186
||||||||||| ||||||||||| | || | || || | |||||| ||||||||
Sbjct 1033 TCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAG 974
Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246
|| || || ||||| || | |||| || || ||||| || || ||||||||||
Sbjct 973 ATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTC 914
Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306
| || | || | ||||| || | |||||||| || || || | |||||| |||
Sbjct 913 TCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACG 854
Query 38307 AATATCTGCATG 38318
|| |||||||||
Sbjct 853 AAGATCTGCATG 842
>seq414668
Length=642
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||| |||||| ||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 561 AAGCTCGTTCCGTTGGCTGTGGTTTCGTTAGATAGTAGATAGGGACAGTAGGAATCTCGT 502
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||||| ||||||||||||||| ||||||||||||
Sbjct 501 GAATCCATTCATGCGCGTCACTTATTAGATGACGA 467
>seq17645
Length=9988
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||| |||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 7484 AAGCCCGTTCCATTGGCTGTGGTTTCGCCAGATAGTAGATAGGGACAGTAGGAATCTCGT 7425
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|| | |||||||||||||||||||||| |||||
Sbjct 7424 TATTTAATTCATGCGCGTCACTAATTAGACGACGA 7390
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956
||||| | || ||||||| ||| |||||||||||| ||||||| | ||||||||
Sbjct 3759 AAGCCGGCTCTCTTGGCTATGGCTTCGCTAGATAGCAGATAGGTACAGTAGCAATCTCGT 3700
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||||| |||| ||| ||||
Sbjct 3699 TAATCCATTCATGCGCGTCACCAATTGGATTACGA 3665
>seq233574
Length=1449
Score = 98.7 bits (108), Expect = 7e-16
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || ||| | |||| || || || |||||| || || ||||| || |||
Sbjct 305 CCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| |||| || || || || || ||||| || || ||||| || || | ||||
Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGG 186
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCAA 38268
| |||||| |||||| ||| || ||||||||||| | ||| ||| | || |
Sbjct 185 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGC--TCCA 128
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| |||| || || || || || |||| || |||||||| |||||||||
Sbjct 127 CCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78
>seq1202
Length=22811
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | |||| |||| || ||||| ||||||||| ||||| ||||| ||
Sbjct 3829 ACCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGA 3770
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| | ||| |||| || | |||||| || || || ||||| || ||||| || | ||
Sbjct 3769 GAGAGTGCGTCCGTCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGG 3710
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| || || || ||| ||| || ||||||||||| | | || | ||||
Sbjct 3709 GATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAAT 3650
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
||| | || ||||| || || || | |||||| || ||||||||||||
Sbjct 3649 TTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCATG 3601
>seq154141
Length=2423
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || ||| | |||| ||| || || |||||| || || ||||| || |||
Sbjct 305 CCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| |||| || || || || || ||||| || || ||||| || || | |||
Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGG 186
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCAA 38268
| |||||| |||||| || || ||||||||||| | ||| ||| | || |
Sbjct 185 ATGCCTTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGC--TCCA 128
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| |||| || || || || || |||| || |||||||| |||||||||
Sbjct 127 CCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78
>seq48829
Length=6067
Score = 93.3 bits (102), Expect = 3e-14
Identities = 65/74 (88%), Gaps = 5/74 (7%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 6057 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 5998
Query 25957 TAATCCTTTCATGC 25970
|||| | |||||||
Sbjct 5997 TAATTCATTCATGC 5984
>seq21692
Length=9146
Score = 89.7 bits (98), Expect = 3e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | |||| |||| || ||||| ||||||||| ||||| ||||| ||
Sbjct 2929 ACCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGA 2870
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| | || |||| || | ||||| || || || |||| || ||||| || | ||
Sbjct 2869 GAGAGTGCGCCCGTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGG 2810
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| || || || ||| ||| || ||||||||||| | | || | |||||
Sbjct 2809 GATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAAC 2750
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
||| | || ||||| || || || | |||||| || ||||||||||||
Sbjct 2749 TTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCATG 2701
>seq46123
Length=6266
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
||||| |||||||| || || ||||| ||||| |||||||| || | | || |
Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || || || || || | | ||||| || | |||| ||||||||||
Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| || ||| |||||||||| | || || | || || || | |||||
Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || ||||||||||| || || || |||||||||
Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATG 1404
>seq58355
Length=5437
Score = 86.0 bits (94), Expect = 4e-12
Identities = 78/95 (82%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG--GGGTA--AT-CTCGT 25956
||||| ||||||||||||||| ||||| ||||||||||||||| ||| || ||| |
Sbjct 4056 AAGCCAGTTCCCTTGGCTGTGATTTCGTTAGATAGTAGATAGGCACAGTAGGATGCTCTT 3997
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|| ||| ||||| |||||| ||||||||||| ||
Sbjct 3996 TACTCCATTCATTTGCGTCATTAATTAGATGATGA 3962
>seq348146
Length=813
Score = 82.4 bits (90), Expect = 5e-11
Identities = 77/95 (81%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG--GGGTA--AT-CTCGT 25956
||| | ||||||||||||||| ||||| ||||||||||||||| ||| || ||| |
Sbjct 475 AAGTCAGTTCCCTTGGCTGTGATTTCGTTAGATAGTAGATAGGCACAGTAGGATGCTCTT 534
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|| ||| ||||| |||||| ||||||||||| ||
Sbjct 535 TACTCCATTCATTTGCGTCATTAATTAGATGATGA 569
>seq347894
Length=813
Score = 82.4 bits (90), Expect = 5e-11
Identities = 77/95 (81%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG--GGGTA--AT-CTCGT 25956
||||| ||||||||||||||| |||| ||||||||||||||| ||| || ||| |
Sbjct 475 AAGCCAGTTCCCTTGGCTGTGATTTCTTTAGATAGTAGATAGGCACAGTAGGATGCTCTT 534
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|| ||| ||||| |||||| ||||||||||| ||
Sbjct 535 TACTCCATTCATTTGCGTCATTAATTAGATGATGA 569
>seq29733
Length=7895
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38103 CGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||||| |||| || ||| || | ||||||||||| |||||||| || | || |
Sbjct 710 CGCAAGACCAGGTGCAAGGTTGAT-TCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCC 652
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || | ||||| |||||||| || || || || || || | |||| || || ||
Sbjct 651 ATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTT 592
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
||| || || ||||||||||| || | || | ||||| || | |||||
Sbjct 591 GTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAAT 532
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
||| || || || | |||||| ||||| |||||||||
Sbjct 531 AGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 332977978003076
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