Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq414596 122 6e-23 seq50752 122 6e-23 seq209436 118 7e-22 seq46948 116 2e-21 seq414668 113 3e-20 seq17645 109 4e-19 seq233574 98.7 7e-16 seq1202 98.7 7e-16 seq154141 95.1 8e-15 seq48829 93.3 3e-14 seq21692 89.7 3e-13 seq46123 87.8 1e-12 seq58355 86.0 4e-12 seq348146 82.4 5e-11 seq347894 82.4 5e-11 seq29733 82.4 5e-11 >seq414596 Length=642 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| |||||||||||||||||||||||||||||||| | |||||||| Sbjct 561 AAGCCCGTTCCGTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 502 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||||||||||| |||||||||||| Sbjct 501 GAATCCATTCATGCGCGTCACTTATTAGATGACGA 467 >seq50752 Length=5925 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 5348 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 5289 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| | ||||| ||||||||||||| |||||||| Sbjct 5288 TAATTCATTCATCCGCGTCACTAATTCGATGACGA 5254 >seq209436 Length=1675 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| |||||||||||||||||||||||||||||||| | |||||||| Sbjct 1441 AAGCCCGTTCCGTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 1382 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||||||| ||||||| ||||||||| || Sbjct 1381 GAATCCTTTCATGCACGTCACTTATTAGATGAGGA 1347 >seq46948 Length=6204 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||| |||||||| || || |||||||||||| |||||||| | Sbjct 1299 TACCACCGCGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGG 1240 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || || | |||||| ||||| || || | | ||||| || | | Sbjct 1239 AAAGAGTACGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCG 1180 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||||| || ||| |||||||||| | || || | || | Sbjct 1179 GGATGCCTTCTTTGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGA 1120 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || || ||||||||||| || || || |||||||| Sbjct 1119 CCTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38087 ATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||||| |||||| || || || |||||||||||||||||| | Sbjct 1758 ATTATCCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGT 1699 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | || |||| || | || || ||||| || || | | ||||| || | Sbjct 1698 CTGAGAGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCG 1639 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||||||||||| || || |||||||||| | | || | | | Sbjct 1638 GTGGGATGCCTTCTTTGTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCT 1579 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | |||||||||||||||||||| || ||||| || || ||||| Sbjct 1578 CGACCTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||||||||| ||||||||||| | || | || || | |||||| |||||||| Sbjct 1033 TCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAG 974 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || ||||| || | |||| || || ||||| || || |||||||||| Sbjct 973 ATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTC 914 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || | || | ||||| || | |||||||| || || || | |||||| ||| Sbjct 913 TCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACG 854 Query 38307 AATATCTGCATG 38318 || ||||||||| Sbjct 853 AAGATCTGCATG 842 >seq414668 Length=642 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| |||||| ||||||||||||||| |||||||||||||||| | |||||||| Sbjct 561 AAGCTCGTTCCGTTGGCTGTGGTTTCGTTAGATAGTAGATAGGGACAGTAGGAATCTCGT 502 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||||||||||| |||||||||||| Sbjct 501 GAATCCATTCATGCGCGTCACTTATTAGATGACGA 467 >seq17645 Length=9988 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| |||||||||||||||| ||||||||||||||| | |||||||| Sbjct 7484 AAGCCCGTTCCATTGGCTGTGGTTTCGCCAGATAGTAGATAGGGACAGTAGGAATCTCGT 7425 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || | |||||||||||||||||||||| ||||| Sbjct 7424 TATTTAATTCATGCGCGTCACTAATTAGACGACGA 7390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||| | || ||||||| ||| |||||||||||| ||||||| | |||||||| Sbjct 3759 AAGCCGGCTCTCTTGGCTATGGCTTCGCTAGATAGCAGATAGGTACAGTAGCAATCTCGT 3700 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||| |||| ||| |||| Sbjct 3699 TAATCCATTCATGCGCGTCACCAATTGGATTACGA 3665 >seq233574 Length=1449 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | |||| || || || |||||| || || ||||| || ||| Sbjct 305 CCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || || || || || ||||| || || ||||| || || | |||| Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGG 186 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCAA 38268 | |||||| |||||| ||| || ||||||||||| | ||| ||| | || | Sbjct 185 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGC--TCCA 128 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | |||| || || || || || |||| || |||||||| ||||||||| Sbjct 127 CCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78 >seq1202 Length=22811 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||| |||| || ||||| ||||||||| ||||| ||||| || Sbjct 3829 ACCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGA 3770 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| |||| || | |||||| || || || ||||| || ||||| || | || Sbjct 3769 GAGAGTGCGTCCGTCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGG 3710 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || || ||| ||| || ||||||||||| | | || | |||| Sbjct 3709 GATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAAT 3650 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| | || ||||| || || || | |||||| || |||||||||||| Sbjct 3649 TTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCATG 3601 >seq154141 Length=2423 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | |||| ||| || || |||||| || || ||||| || ||| Sbjct 305 CCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || || || || || ||||| || || ||||| || || | ||| Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGG 186 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCAA 38268 | |||||| |||||| || || ||||||||||| | ||| ||| | || | Sbjct 185 ATGCCTTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGC--TCCA 128 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | |||| || || || || || |||| || |||||||| ||||||||| Sbjct 127 CCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78 >seq48829 Length=6067 Score = 93.3 bits (102), Expect = 3e-14 Identities = 65/74 (88%), Gaps = 5/74 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 6057 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 5998 Query 25957 TAATCCTTTCATGC 25970 |||| | ||||||| Sbjct 5997 TAATTCATTCATGC 5984 >seq21692 Length=9146 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||| |||| || ||||| ||||||||| ||||| ||||| || Sbjct 2929 ACCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGA 2870 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | || |||| || | ||||| || || || |||| || ||||| || | || Sbjct 2869 GAGAGTGCGCCCGTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGG 2810 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || || ||| ||| || ||||||||||| | | || | ||||| Sbjct 2809 GATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAAC 2750 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| | || ||||| || || || | |||||| || |||||||||||| Sbjct 2749 TTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCATG 2701 >seq46123 Length=6266 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| |||||||| || || ||||| ||||| |||||||| || | | || | Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | || || || || || || | | ||||| || | |||| |||||||||| Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| || ||| |||||||||| | || || | || || || | ||||| Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || ||||||||||| || || || ||||||||| Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATG 1404 >seq58355 Length=5437 Score = 86.0 bits (94), Expect = 4e-12 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG--GGGTA--AT-CTCGT 25956 ||||| ||||||||||||||| ||||| ||||||||||||||| ||| || ||| | Sbjct 4056 AAGCCAGTTCCCTTGGCTGTGATTTCGTTAGATAGTAGATAGGCACAGTAGGATGCTCTT 3997 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||| ||||| |||||| ||||||||||| || Sbjct 3996 TACTCCATTCATTTGCGTCATTAATTAGATGATGA 3962 >seq348146 Length=813 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG--GGGTA--AT-CTCGT 25956 ||| | ||||||||||||||| ||||| ||||||||||||||| ||| || ||| | Sbjct 475 AAGTCAGTTCCCTTGGCTGTGATTTCGTTAGATAGTAGATAGGCACAGTAGGATGCTCTT 534 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||| ||||| |||||| ||||||||||| || Sbjct 535 TACTCCATTCATTTGCGTCATTAATTAGATGATGA 569 >seq347894 Length=813 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG--GGGTA--AT-CTCGT 25956 ||||| ||||||||||||||| |||| ||||||||||||||| ||| || ||| | Sbjct 475 AAGCCAGTTCCCTTGGCTGTGATTTCTTTAGATAGTAGATAGGCACAGTAGGATGCTCTT 534 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||| ||||| |||||| ||||||||||| || Sbjct 535 TACTCCATTCATTTGCGTCATTAATTAGATGATGA 569 >seq29733 Length=7895 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38103 CGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| |||| || ||| || | ||||||||||| |||||||| || | || | Sbjct 710 CGCAAGACCAGGTGCAAGGTTGAT-TCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCC 652 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | ||||| |||||||| || || || || || || | |||| || || || Sbjct 651 ATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTT 592 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| || || ||||||||||| || | || | ||||| || | ||||| Sbjct 591 GTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAAT 532 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| || || || | |||||| ||||| ||||||||| Sbjct 531 AGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 332977978003076