Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 116 3e-21
seq46123 116 3e-21
seq29733 95.1 1e-14
seq182031 91.5 1e-13
seq21692 86.0 5e-12
seq1202 86.0 5e-12
>seq46948
Length=6204
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||||||||| ||||| || || | || || | || || ||| |
Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||| |||| ||| |||| ||| ||| ||||||||||| || || || ||||||
Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCGCCGGACCAA 1190
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || |||||||||||| | || |||| || ||| | |||||||||
Sbjct 1191 CAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAAC 1250
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207
|||||||| || || || || ||||| ||
Sbjct 1251 ATTCAAAAGGAGTCAACCCTGCATTTGGT 1279
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| ||||| |||||| | || || | || || ||| |
Sbjct 1527 ATGCAAATCTTTGTGAAGACATTGACGGGTAAAACTATTACTCTGGAGGTCGAGCCTAGC 1586
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||| | || ||| |||| || ||| ||||||||||| || ||||| ||||||
Sbjct 1587 GACTCCATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1646
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || ||||| || || | || || | ||||| | || ||||||
Sbjct 1647 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACGCTCTCAGACTACAAT 1706
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||| || || || || || || |||||
Sbjct 1707 ATTCAAAAGGAGTCTACACTGCACTTGGTGCT 1738
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | ||||| || | || || | || || ||| | |
Sbjct 843 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 902
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||| | |||||| ||||| || ||| ||||| || || || || || ||||||
Sbjct 903 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 962
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||||||||||||| | ||||||| ||||| | ||||||||
Sbjct 963 CAGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTACAAC 1022
Query 25179 ATTCAAAAAGAATCCAC 25195
|||||||| ||||| ||
Sbjct 1023 ATTCAAAAGGAATCAAC 1039
>seq46123
Length=6266
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||||||||| ||||| || || | || || | || || ||| |
Sbjct 1405 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACTCTGGAGGTCGAGCCCAGC 1464
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||| |||| ||| |||| ||| ||| ||||||||||| || ||||| ||||||
Sbjct 1465 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1524
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || || ||||| || | || |||| |||||| | |||||||||
Sbjct 1525 CAGAGGTTGATCTTCGCAGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGATTACAAC 1584
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207
||||| || ||||| || |||||||| ||
Sbjct 1585 ATTCAGAAGGAATCGACCCTACATTTGGT 1613
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | ||||| || | || || | || || ||| | |
Sbjct 1177 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 1236
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||| | |||||| ||||| || ||| ||||| || || || || || |||||
Sbjct 1237 GACTCGATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAG 1296
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || |||||||||||||| | ||||||| ||||| | |||||||||
Sbjct 1297 CAGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAAC 1356
Query 25179 ATTCAAAAAGAATCCAC 25195
|||||||||||||| ||
Sbjct 1357 ATTCAAAAAGAATCAAC 1373
>seq29733
Length=7895
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | ||||| || | || || | || || ||| | |
Sbjct 496 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 555
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||| | |||||| ||||| || ||| ||||| || || || || || |||||
Sbjct 556 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAG 615
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|||||| | || |||||||||||||| | ||||||| ||||| | |||||||||
Sbjct 616 CAGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAAC 675
Query 25179 ATTCAAAAAGAATCCAC 25195
|||||||| ||||| ||
Sbjct 676 ATTCAAAAGGAATCAAC 692
>seq182031
Length=1999
Score = 91.5 bits (100), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 25098 GAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGAT 25157
||||| ||||||||||| ||||||| | ||| ||||||||| || || ||||| ||
Sbjct 1153 GAAGGCATTCCACCTGATGAACAGCGCTTAGTTTATGCCGGCAAGCAGTTGGAAGACGAA 1094
Query 25158 CGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTA 25217
||||| || || |||||||| |||| || |||||| | || || || | | |||||
Sbjct 1093 CGCACATTGATGGACTACAATATACAAAGCGATTCCACGATTCACTTGGTTCGACGGCTA 1034
Query 25218 AGAGGAGG 25225
||||| ||
Sbjct 1033 AGAGGTGG 1026
>seq21692
Length=9146
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || | ||||| || | ||||| ||||||| ||| | ||
Sbjct 2702 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTCG 2761
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| | || ||| ||||| | || | ||| || || || || || || || |||||
Sbjct 2762 GACTCAATTGAGAATGTGAAGGCCAAGATTCAG-GATAAGGAGGGTATCCCGCCAGACCA 2820
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || || || |||||||| | || || | |||||| | ||||| ||
Sbjct 2821 ACAGCGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAA 2880
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||| ||||| || || || || ||
Sbjct 2881 TATCCAAAAGGAGTCGACTCTGCA 2904
>seq1202
Length=22811
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || | ||||| || | ||||| ||||| | ||| | ||
Sbjct 3602 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTCG 3661
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| | || ||| ||||| | || | ||| || || || || || || || |||||
Sbjct 3662 GACTCAATTGAGAATGTGAAGGCCAAGATTCAG-GATAAGGAGGGTATCCCGCCAGACCA 3720
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || || || ||||||||| | || || | |||||| | ||||| ||
Sbjct 3721 ACAGCGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAA 3780
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||| ||||| || || || || ||
Sbjct 3781 TATCCAAAAGGAGTCGACTCTGCA 3804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430780377480740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |