Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq46948 116 3e-21 seq46123 116 3e-21 seq29733 95.1 1e-14 seq182031 91.5 1e-13 seq21692 86.0 5e-12 seq1202 86.0 5e-12 >seq46948 Length=6204 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| ||||| || || | || || | || || ||| | Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| ||| |||| ||| ||| ||||||||||| || || || |||||| Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCGCCGGACCAA 1190 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || |||||||||||| | || |||| || ||| | ||||||||| Sbjct 1191 CAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAAC 1250 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||| || || || || ||||| || Sbjct 1251 ATTCAAAAGGAGTCAACCCTGCATTTGGT 1279 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| |||||| | || || | || || ||| | Sbjct 1527 ATGCAAATCTTTGTGAAGACATTGACGGGTAAAACTATTACTCTGGAGGTCGAGCCTAGC 1586 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| |||| || ||| ||||||||||| || ||||| |||||| Sbjct 1587 GACTCCATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1646 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||| || || | || || | ||||| | || |||||| Sbjct 1647 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACGCTCTCAGACTACAAT 1706 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || || || ||||| Sbjct 1707 ATTCAAAAGGAGTCTACACTGCACTTGGTGCT 1738 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || | || || | || || ||| | | Sbjct 843 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 902 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | |||||| ||||| || ||| ||||| || || || || || |||||| Sbjct 903 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 962 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||||||| | ||||||| ||||| | |||||||| Sbjct 963 CAGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTACAAC 1022 Query 25179 ATTCAAAAAGAATCCAC 25195 |||||||| ||||| || Sbjct 1023 ATTCAAAAGGAATCAAC 1039 >seq46123 Length=6266 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| ||||| || || | || || | || || ||| | Sbjct 1405 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACTCTGGAGGTCGAGCCCAGC 1464 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| ||| |||| ||| ||| ||||||||||| || ||||| |||||| Sbjct 1465 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1524 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| || | || |||| |||||| | ||||||||| Sbjct 1525 CAGAGGTTGATCTTCGCAGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGATTACAAC 1584 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || ||||| || |||||||| || Sbjct 1585 ATTCAGAAGGAATCGACCCTACATTTGGT 1613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || | || || | || || ||| | | Sbjct 1177 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 1236 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | |||||| ||||| || ||| ||||| || || || || || ||||| Sbjct 1237 GACTCGATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAG 1296 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||||||||| | ||||||| ||||| | ||||||||| Sbjct 1297 CAGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAAC 1356 Query 25179 ATTCAAAAAGAATCCAC 25195 |||||||||||||| || Sbjct 1357 ATTCAAAAAGAATCAAC 1373 >seq29733 Length=7895 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || | || || | || || ||| | | Sbjct 496 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 555 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | |||||| ||||| || ||| ||||| || || || || || ||||| Sbjct 556 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAG 615 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || |||||||||||||| | ||||||| ||||| | ||||||||| Sbjct 616 CAGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAAC 675 Query 25179 ATTCAAAAAGAATCCAC 25195 |||||||| ||||| || Sbjct 676 ATTCAAAAGGAATCAAC 692 >seq182031 Length=1999 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 25098 GAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGAT 25157 ||||| ||||||||||| ||||||| | ||| ||||||||| || || ||||| || Sbjct 1153 GAAGGCATTCCACCTGATGAACAGCGCTTAGTTTATGCCGGCAAGCAGTTGGAAGACGAA 1094 Query 25158 CGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTA 25217 ||||| || || |||||||| |||| || |||||| | || || || | | ||||| Sbjct 1093 CGCACATTGATGGACTACAATATACAAAGCGATTCCACGATTCACTTGGTTCGACGGCTA 1034 Query 25218 AGAGGAGG 25225 ||||| || Sbjct 1033 AGAGGTGG 1026 >seq21692 Length=9146 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || | ||||| || | ||||| ||||||| ||| | || Sbjct 2702 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTCG 2761 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | || ||| ||||| | || | ||| || || || || || || || ||||| Sbjct 2762 GACTCAATTGAGAATGTGAAGGCCAAGATTCAG-GATAAGGAGGGTATCCCGCCAGACCA 2820 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || |||||||| | || || | |||||| | ||||| || Sbjct 2821 ACAGCGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAA 2880 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| ||||| || || || || || Sbjct 2881 TATCCAAAAGGAGTCGACTCTGCA 2904 >seq1202 Length=22811 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || | ||||| || | ||||| ||||| | ||| | || Sbjct 3602 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTCG 3661 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | || ||| ||||| | || | ||| || || || || || || || ||||| Sbjct 3662 GACTCAATTGAGAATGTGAAGGCCAAGATTCAG-GATAAGGAGGGTATCCCGCCAGACCA 3720 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || ||||||||| | || || | |||||| | ||||| || Sbjct 3721 ACAGCGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAA 3780 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| ||||| || || || || || Sbjct 3781 TATCCAAAAGGAGTCGACTCTGCA 3804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430780377480740