Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq15476 104 5e-17 seq19399 102 2e-16 seq381426 100 6e-16 seq327860 98.7 2e-15 seq157919 98.7 2e-15 seq48536 98.7 2e-15 seq15675 98.7 2e-15 seq10778 98.7 2e-15 seq150905 96.9 7e-15 seq267693 95.1 2e-14 seq117302 95.1 2e-14 seq36239 95.1 2e-14 seq5131 95.1 2e-14 seq447532 93.3 9e-14 seq296937 93.3 9e-14 seq416376 91.5 3e-13 seq313629 91.5 3e-13 seq188816 91.5 3e-13 seq34060 91.5 3e-13 seq54355 89.7 1e-12 seq17338 89.7 1e-12 seq27187 87.8 4e-12 seq270649 86.0 1e-11 seq224796 86.0 1e-11 seq43131 86.0 1e-11 seq1017 84.2 4e-11 >seq15476 Length=10527 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 1904 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1963 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 1964 CCCACGTCGGGC 1975 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 10463 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 10522 Query 142564 CCCAC 142568 ||||| Sbjct 10523 CCCAC 10527 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAG-AGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||| ||| | ||||||||||||| | ||||||||||||||| Sbjct 7113 GCCCGGCTAGCTCAGTCGGTAGGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 7172 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 7173 CCCCACGTTGGGC 7185 >seq19399 Length=9595 Score = 102 bits (112), Expect = 2e-16 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 1354 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1295 Query 142564 CCCACATCGGG 142574 ||||| ||||| Sbjct 1294 CCCACGTCGGG 1284 >seq381426 Length=715 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 215 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 156 Query 142564 CCCACATCGGGCA 142576 ||||| | ||||| Sbjct 155 CCCACGTTGGGCA 143 >seq327860 Length=890 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 2 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 61 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 62 CCCACGTTGGGC 73 >seq157919 Length=2360 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 1146 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1205 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1206 CCCACGTTGGGC 1217 >seq48536 Length=6089 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 3632 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3573 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3572 CCCACGTTGGGC 3561 >seq15675 Length=10477 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 8987 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 8928 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 8927 CCCACGTTGGGC 8916 >seq10778 Length=12061 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 9825 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 9884 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 9885 CCCACGTTGGGC 9896 >seq150905 Length=2479 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||| Sbjct 2416 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2357 Query 142564 CCCACATCGGG 142574 ||||| ||||| Sbjct 2356 CCCACGTCGGG 2346 >seq267693 Length=1199 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 546 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCG-GGTCGTGGGTTCGAGC 488 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 487 CCCACGTTGGGC 476 >seq117302 Length=3190 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||| |||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 2095 GCCCGGCTAGCTTAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2154 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2155 CCCACGTTGGGC 2166 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 1891 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1950 >seq36239 Length=7161 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570 |||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||| | Sbjct 7160 TAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCCCCACGT 7101 Query 142571 CGGGC 142575 ||||| Sbjct 7100 CGGGC 7096 >seq5131 Length=15476 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||| ||||||| Sbjct 3472 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGATTCGAGC 3531 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3532 CCCACGTTGGGC 3543 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 6148 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTTTTAATCTCGGGGTCGTGGGTTCGAGC 6089 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 6088 CCCACGTTGGGC 6077 >seq447532 Length=569 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142507 CGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||||| Sbjct 569 CGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCCCC 510 Query 142567 ACATCGGGC 142575 || | |||| Sbjct 509 ACGTTGGGC 501 >seq296937 Length=1034 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAG-AGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||| ||| | ||||||||||||| | ||||||||||||||| Sbjct 96 GCCCGGCTAGCTCAGTCGGTAGGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 37 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 36 CCCCACGTTGGGC 24 >seq416376 Length=638 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570 |||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||| | Sbjct 118 TAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCCCCACGT 177 Query 142571 CGGGC 142575 |||| Sbjct 178 TGGGC 182 >seq313629 Length=952 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565 |||| |||||||||||||||||| | ||| ||||||||| | |||||||||||||||||| Sbjct 427 CCGGCTAGCTCAGTCGGTAGAGCACGAGATTCTTAATCTCGGGGTCGTGGGTTCGAGCCC 486 Query 142566 CACATCGGGC 142575 ||| | |||| Sbjct 487 CACGTTGGGC 496 >seq188816 Length=1911 Score = 91.5 bits (100), Expect = 3e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 63 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 4 Query 142564 CCC 142566 ||| Sbjct 3 CCC 1 >seq34060 Length=7396 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570 |||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||| | Sbjct 3151 TAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCCCCACGT 3092 Query 142571 CGGGC 142575 |||| Sbjct 3091 TGGGC 3087 >seq54355 Length=5686 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | | |||||||||||||| Sbjct 3040 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGATCGTGGGTTCGAGC 2981 Query 142564 CCCACATCGGGC 142575 || || | |||| Sbjct 2980 CCAACGTTGGGC 2969 >seq17338 Length=10062 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 ||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||| | Sbjct 9134 CCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGAGTCGTGGGTTCGAGTC 9193 Query 142565 CCACATCGGGCA 142576 |||| | ||||| Sbjct 9194 CCACGTTGGGCA 9205 >seq27187 Length=8237 Score = 87.8 bits (96), Expect = 4e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAG-AGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||| ||| | ||||||||||||| | |||||||||||||| Sbjct 7030 GCCCGGCTAGCTCAGTCGGTAGGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAC 6971 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 6970 CCCCACGTTGGGC 6958 >seq270649 Length=1181 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 217813 GCTGGCACCAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCC 217872 || || ||||| || |||| ||| || |||||||| || |||||||| |||||| Sbjct 199 GCCGGTACCAAGAATTCTGCCGCCTGTACGCTCATCCTTACGGAGGGAGATTCAGCTAAG 258 Query 217873 ACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTC 217932 || ||||| || ||| | |||||| |||||||| | || ||| | || || || Sbjct 259 ACCCTGGCTGTTGCGGGTTTGAGCGTGGTTGGTCGTGACCGTTACGGTGTTTTTCCACTG 318 Query 217933 CGTGGTAAGCTGCTCAACGTGCGCGATGCCTC 217964 || || || ||||||||||| || || ||||| Sbjct 319 CGAGGCAAACTGCTCAACGTACGGGAGGCCTC 350 >seq224796 Length=1527 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 56 GCCCGGCAAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCTGGGTCGTGGGTTCGAGC 115 Query 142564 CCCAC 142568 ||||| Sbjct 116 CCCAC 120 >seq43131 Length=6507 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 217813 GCTGGCACCAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCC 217872 || || ||||| || |||| ||| || |||||||| || |||||||| |||||| Sbjct 4601 GCCGGTACCAAGAATTCTGCCGCCTGTACGCTCATCCTTACGGAGGGAGATTCAGCTAAG 4660 Query 217873 ACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTC 217932 || ||||| || ||| | |||||| |||||||| | || ||| | || || || Sbjct 4661 ACCCTGGCTGTTGCGGGTTTGAGCGTGGTTGGTCGTGACCGTTACGGTGTTTTTCCACTG 4720 Query 217933 CGTGGTAAGCTGCTCAACGTGCGCGATGCCTC 217964 || || || ||||||||||| || || ||||| Sbjct 4721 CGAGGCAAACTGCTCAACGTACGGGAGGCCTC 4752 >seq1017 Length=23742 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565 |||| |||||||||||||||||| | ||| ||||| ||| | ||||||||||||||| || Sbjct 9291 CCGGCTAGCTCAGTCGGTAGAGCACGAGATTCTTAGTCTCGGGGTCGTGGGTTCGAGTCC 9232 Query 142566 CACATCGGGCA 142576 ||| | ||||| Sbjct 9231 CACGTTGGGCA 9221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1021484050375036