Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq15476 104 5e-17
seq19399 102 2e-16
seq381426 100 6e-16
seq327860 98.7 2e-15
seq157919 98.7 2e-15
seq48536 98.7 2e-15
seq15675 98.7 2e-15
seq10778 98.7 2e-15
seq150905 96.9 7e-15
seq267693 95.1 2e-14
seq117302 95.1 2e-14
seq36239 95.1 2e-14
seq5131 95.1 2e-14
seq447532 93.3 9e-14
seq296937 93.3 9e-14
seq416376 91.5 3e-13
seq313629 91.5 3e-13
seq188816 91.5 3e-13
seq34060 91.5 3e-13
seq54355 89.7 1e-12
seq17338 89.7 1e-12
seq27187 87.8 4e-12
seq270649 86.0 1e-11
seq224796 86.0 1e-11
seq43131 86.0 1e-11
seq1017 84.2 4e-11
>seq15476
Length=10527
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 1904 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1963
Query 142564 CCCACATCGGGC 142575
||||| ||||||
Sbjct 1964 CCCACGTCGGGC 1975
Score = 95.1 bits (104), Expect = 2e-14
Identities = 60/65 (92%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 10463 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 10522
Query 142564 CCCAC 142568
|||||
Sbjct 10523 CCCAC 10527
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAG-AGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||||||||| ||| | ||||||||||||| | |||||||||||||||
Sbjct 7113 GCCCGGCTAGCTCAGTCGGTAGGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 7172
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 7173 CCCCACGTTGGGC 7185
>seq19399
Length=9595
Score = 102 bits (112), Expect = 2e-16
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 1354 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1295
Query 142564 CCCACATCGGG 142574
||||| |||||
Sbjct 1294 CCCACGTCGGG 1284
>seq381426
Length=715
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 215 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 156
Query 142564 CCCACATCGGGCA 142576
||||| | |||||
Sbjct 155 CCCACGTTGGGCA 143
>seq327860
Length=890
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 2 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 61
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 62 CCCACGTTGGGC 73
>seq157919
Length=2360
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 1146 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1205
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 1206 CCCACGTTGGGC 1217
>seq48536
Length=6089
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3632 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3573
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 3572 CCCACGTTGGGC 3561
>seq15675
Length=10477
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 8987 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 8928
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 8927 CCCACGTTGGGC 8916
>seq10778
Length=12061
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 9825 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 9884
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 9885 CCCACGTTGGGC 9896
>seq150905
Length=2479
Score = 96.9 bits (106), Expect = 7e-15
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 2416 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2357
Query 142564 CCCACATCGGG 142574
||||| |||||
Sbjct 2356 CCCACGTCGGG 2346
>seq267693
Length=1199
Score = 95.1 bits (104), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 546 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCG-GGTCGTGGGTTCGAGC 488
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 487 CCCACGTTGGGC 476
>seq117302
Length=3190
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||| |||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 2095 GCCCGGCTAGCTTAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2154
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 2155 CCCACGTTGGGC 2166
Score = 86.0 bits (94), Expect = 1e-11
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 1891 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1950
>seq36239
Length=7161
Score = 95.1 bits (104), Expect = 2e-14
Identities = 60/65 (92%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570
|||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||| |
Sbjct 7160 TAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCCCCACGT 7101
Query 142571 CGGGC 142575
|||||
Sbjct 7100 CGGGC 7096
>seq5131
Length=15476
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | |||||||| |||||||
Sbjct 3472 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGATTCGAGC 3531
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 3532 CCCACGTTGGGC 3543
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||||||||
Sbjct 6148 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTTTTAATCTCGGGGTCGTGGGTTCGAGC 6089
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 6088 CCCACGTTGGGC 6077
>seq447532
Length=569
Score = 93.3 bits (102), Expect = 9e-14
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 142507 CGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566
||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||||||
Sbjct 569 CGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCCCC 510
Query 142567 ACATCGGGC 142575
|| | ||||
Sbjct 509 ACGTTGGGC 501
>seq296937
Length=1034
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAG-AGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||||||||| ||| | ||||||||||||| | |||||||||||||||
Sbjct 96 GCCCGGCTAGCTCAGTCGGTAGGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 37
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 36 CCCCACGTTGGGC 24
>seq416376
Length=638
Score = 91.5 bits (100), Expect = 3e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570
|||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||| |
Sbjct 118 TAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCCCCACGT 177
Query 142571 CGGGC 142575
||||
Sbjct 178 TGGGC 182
>seq313629
Length=952
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565
|||| |||||||||||||||||| | ||| ||||||||| | ||||||||||||||||||
Sbjct 427 CCGGCTAGCTCAGTCGGTAGAGCACGAGATTCTTAATCTCGGGGTCGTGGGTTCGAGCCC 486
Query 142566 CACATCGGGC 142575
||| | ||||
Sbjct 487 CACGTTGGGC 496
>seq188816
Length=1911
Score = 91.5 bits (100), Expect = 3e-13
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 63 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 4
Query 142564 CCC 142566
|||
Sbjct 3 CCC 1
>seq34060
Length=7396
Score = 91.5 bits (100), Expect = 3e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570
|||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||| |
Sbjct 3151 TAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCCCCACGT 3092
Query 142571 CGGGC 142575
||||
Sbjct 3091 TGGGC 3087
>seq54355
Length=5686
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | | ||||||||||||||
Sbjct 3040 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGATCGTGGGTTCGAGC 2981
Query 142564 CCCACATCGGGC 142575
|| || | ||||
Sbjct 2980 CCAACGTTGGGC 2969
>seq17338
Length=10062
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564
||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||| |
Sbjct 9134 CCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGAGTCGTGGGTTCGAGTC 9193
Query 142565 CCACATCGGGCA 142576
|||| | |||||
Sbjct 9194 CCACGTTGGGCA 9205
>seq27187
Length=8237
Score = 87.8 bits (96), Expect = 4e-12
Identities = 64/73 (88%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAG-AGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||||||||| ||| | ||||||||||||| | ||||||||||||||
Sbjct 7030 GCCCGGCTAGCTCAGTCGGTAGGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAC 6971
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 6970 CCCCACGTTGGGC 6958
>seq270649
Length=1181
Score = 86.0 bits (94), Expect = 1e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 217813 GCTGGCACCAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCC 217872
|| || ||||| || |||| ||| || |||||||| || |||||||| ||||||
Sbjct 199 GCCGGTACCAAGAATTCTGCCGCCTGTACGCTCATCCTTACGGAGGGAGATTCAGCTAAG 258
Query 217873 ACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTC 217932
|| ||||| || ||| | |||||| |||||||| | || ||| | || || ||
Sbjct 259 ACCCTGGCTGTTGCGGGTTTGAGCGTGGTTGGTCGTGACCGTTACGGTGTTTTTCCACTG 318
Query 217933 CGTGGTAAGCTGCTCAACGTGCGCGATGCCTC 217964
|| || || ||||||||||| || || |||||
Sbjct 319 CGAGGCAAACTGCTCAACGTACGGGAGGCCTC 350
>seq224796
Length=1527
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||
Sbjct 56 GCCCGGCAAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCTGGGTCGTGGGTTCGAGC 115
Query 142564 CCCAC 142568
|||||
Sbjct 116 CCCAC 120
>seq43131
Length=6507
Score = 86.0 bits (94), Expect = 1e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 217813 GCTGGCACCAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCC 217872
|| || ||||| || |||| ||| || |||||||| || |||||||| ||||||
Sbjct 4601 GCCGGTACCAAGAATTCTGCCGCCTGTACGCTCATCCTTACGGAGGGAGATTCAGCTAAG 4660
Query 217873 ACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTC 217932
|| ||||| || ||| | |||||| |||||||| | || ||| | || || ||
Sbjct 4661 ACCCTGGCTGTTGCGGGTTTGAGCGTGGTTGGTCGTGACCGTTACGGTGTTTTTCCACTG 4720
Query 217933 CGTGGTAAGCTGCTCAACGTGCGCGATGCCTC 217964
|| || || ||||||||||| || || |||||
Sbjct 4721 CGAGGCAAACTGCTCAACGTACGGGAGGCCTC 4752
>seq1017
Length=23742
Score = 84.2 bits (92), Expect = 4e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565
|||| |||||||||||||||||| | ||| ||||| ||| | ||||||||||||||| ||
Sbjct 9291 CCGGCTAGCTCAGTCGGTAGAGCACGAGATTCTTAGTCTCGGGGTCGTGGGTTCGAGTCC 9232
Query 142566 CACATCGGGCA 142576
||| | |||||
Sbjct 9231 CACGTTGGGCA 9221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1021484050375036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |