Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 158 1e-33
seq46123 138 9e-28
seq29733 100 2e-16
>seq46948
Length=6204
Score = 158 bits (174), Expect = 1e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || || | ||| || ||||| | || || || ||||||||||||||||||
Sbjct 1300 ATACCACCGCGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCG 1241
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| ||| ||||||||||| || ||| |||| | | ||||||||||||
Sbjct 1240 GAAAGAGTACGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGC 1181
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| |||||||||||||| |||||| ||| | | |||| | |||| ||| |||
Sbjct 1180 GGGATGCCTTCTTTGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCG 1121
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | ||| ||||| |||| || |||||||| ||||||||
Sbjct 1120 ACCTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
Score = 114 bits (126), Expect = 1e-20
Identities = 165/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|||||||| || |||| ||| |||| || | || ||||| |||||||||||||||||
Sbjct 1072 ATACCGCCGCGGAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCA 1013
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || |||||| |||||||| || || |||| || ||||||||||| ||
Sbjct 1012 GAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGC 953
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| ||||| || | | || | | ||| ||| ||
Sbjct 952 GGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCA 893
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 114385
|| |||| || | || |||||||| || ||||| || || |||||||||||
Sbjct 892 ACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 840
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| ||||| || | || || || || | ||||| || |||||||| ||||| ||
Sbjct 1753 CCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAG 1694
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| || || || || || || ||||| ||| |||| | | |||||||||||| ||
Sbjct 1693 AGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 1634
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
|||||||||||||| ||||| ||| | | |||| || |||| | | |||||
Sbjct 1633 ATGCCTTCTTTGTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACC 1574
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|||| || | ||||| || |||| || || ||||| || |||||
Sbjct 1573 TCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || |||| ||| || | || | || ||||| |||||||||||||| |||
Sbjct 1528 ATACCACCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCG 1469
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || ||| ||||| || || ||||| || |||| || ||||| ||||| ||
Sbjct 1468 GAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGC 1409
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| ||||| || | | || | | ||| ||| |||
Sbjct 1408 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCG 1349
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || ||||| |||| || || ||||| ||||||||
Sbjct 1348 ACCTCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299
>seq46123
Length=6266
Score = 138 bits (152), Expect = 9e-28
Identities = 159/214 (74%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229
||| || ||||||| || ||||| || ||||||||||||||| | ||| || |||
Sbjct 1617 CAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATC 1558
Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289
||||| || || || ||| |||| | | |||||||||||| || ||||||||||||||
Sbjct 1557 CTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTC 1498
Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349
|||||| ||| | | |||| | |||| ||| ||||| |||| || | |||
Sbjct 1497 CTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGT 1438
Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
||||| |||| || |||||||| |||||||||
Sbjct 1437 CTTGCCCGTCAAGGTCTTTACAAAGATCTGCATG 1404
Score = 105 bits (116), Expect = 6e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| ||||| || |||| ||| || | || | || ||||||||||||||||||||||||
Sbjct 1406 ATGCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCG 1347
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || |||||| || ||||| || || |||| || ||||| ||||| ||
Sbjct 1346 GAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGC 1287
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| ||||| || | | || | | ||| ||| ||
Sbjct 1286 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCA 1227
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 114385
|| |||| || | || |||||||| || ||||| || || |||||||||||
Sbjct 1226 ACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 1174
>seq29733
Length=7895
Score = 100 bits (110), Expect = 2e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| ||||| || |||| ||| || | || | || ||||| ||||||||||||||||||
Sbjct 725 ATGCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCG 666
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || |||||| || ||||| || || |||| || ||||| ||||| ||
Sbjct 665 GAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGC 606
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| ||||| || | | || | | ||| ||| ||
Sbjct 605 GGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCA 546
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 114385
|| |||| || | || |||||||| || ||||| || || |||||||||||
Sbjct 545 ACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 417664345310352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |