Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq257780 156 8e-33
>seq257780
Length=1265
Score = 156 bits (172), Expect = 8e-33
Identities = 277/399 (69%), Gaps = 5/399 (1%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA-GAGTCCCGACGCAAC 42691
||||| | || |||||||| |||||||| ||||| ||||| | || || | || |
Sbjct 245 CCCTGTGTGAAAAAGAAGGCTGACTGGGCACTCAAGTGGATTGGTGACTCAAAATCCA-C 303
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
||| ||| | |||||||||||| | ||||| ||||| | ||||| || || | ||
Sbjct 304 GTTTCCAGAGCGCCTGGTAGCCTTTGCAGCCGTAGAGGGGGTTTTCTTTTCTGGGTCGTT 363
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811
|| |||||||||||||| ||| || | | ||||| || | || ||| || ||
Sbjct 364 TGCGTCCATCTTCTGGCTGAAGAAGCGTGGGCTTATGCCAGGGTTGACATTCAGCAATGA 423
Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871
||| || ||| | || ||||| || || | ||||| || || || |||||| ||| ||
Sbjct 424 ACTAATAAGCCGTGATGAGGGACTTCACACTGACTTCGCTTGTCTTCTGTTC-CGA--CA 480
Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931
| |||| |||| ||||| |||||||| || || || || ||| || || || ||
Sbjct 481 CATCAGAAACAAACCCTCTAAGGAGCGCGTAGAAGCGATTATGCGGGAAGCTGTTGATAT 540
Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCT 42991
||| ||| || || || | | || || ||| | || ||||||||||| | ||
Sbjct 541 CGAAGTGGAATTTCTGACTGACGCTCTTCCTGTGGACTTGATCGGCATGAACTGCCGTCT 600
Query 42992 CATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT 43030
||| | ||||||||| || || ||||| | ||||||
Sbjct 601 GATGGCCCAGTACATCCGTTATGTTGCCGATCGTCTCCT 639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 938644881840960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |