Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1202 143 6e-29 seq233574 138 3e-27 seq154141 138 3e-27 seq46948 136 9e-27 seq21692 134 3e-26 seq46123 125 2e-23 >seq1202 Length=22811 Score = 143 bits (158), Expect = 6e-29 Identities = 149/194 (77%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||||||||| || | ||| ||||||||||| || | |||||| || |||||| Sbjct 3792 TCCTTTTGGATATTATAATCCGAGAGAGTGCGTCCGTCCTCGAGTTGTTTGCCAGCGAAG 3733 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || |||||||| ||||| ||| || || |||||||| || || || ||||| Sbjct 3732 ATTAGTCGCTGTTGG---TCTGGCGGGATACCCTCCTTATCCTGAATCTTGGCCTTCACA 3676 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || || || | || | |||||| ||||| ||||||||||| || || ||| Sbjct 3675 TTCTCAATTGAGTCCGAAGGCTCAATTTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTG 3616 Query 288460 ACGAATATCTGCAT 288473 || ||||||||||| Sbjct 3615 ACAAATATCTGCAT 3602 >seq233574 Length=1449 Score = 138 bits (152), Expect = 3e-27 Identities = 173/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || || | ||| || || ||||| || |||| Sbjct 309 CATG-CCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGT 251 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||||| || |||||||| || || || || || ||||||||||| || || | Sbjct 250 CTGACAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTG---GT 194 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| ||||| || ||||| || ||||| ||||| || || || || || |||| Sbjct 193 CTGGGGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCG 134 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || ||||| || ||||| ||||| ||||| |||||||| Sbjct 133 GCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79 >seq154141 Length=2423 Score = 138 bits (152), Expect = 3e-27 Identities = 173/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || ||||| | || || || ||||| || |||| Sbjct 309 CATG-CCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGT 251 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||||| || |||||||| || || || || || ||||||||||| || || | Sbjct 250 CTGACAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTG---GT 194 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| ||||| || |||||||| |||| ||||| || || || || ||||||| Sbjct 193 CTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCG 134 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || ||||| || ||||| ||||| ||||| |||||||| Sbjct 133 GCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79 >seq46948 Length=6204 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||||| | || || || | || ||| ||||| || || ||||||| | Sbjct 1525 CCACCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1466 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| |||||||| | || || || || |||||||| ||||| || ||| Sbjct 1465 AGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTG---GTCTGGC 1409 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || || |||||||| || || |||||||| || || || || || | || Sbjct 1408 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCG 1349 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 1348 ACCTCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| ||||| | ||||||||| ||||| || | || || || |||||| Sbjct 1717 TCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAG 1658 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | |||||| |||||| |||||||| |||||||| ||||||||||| || Sbjct 1657 ATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTCGCTTTCACATTC 1598 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || ||||| | || || || || || || || || || |||| ||||| || Sbjct 1597 TCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACA 1538 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1537 AAGATTTGCAT 1527 >seq21692 Length=9146 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||||||||| || | ||| ||||| ||||| || | ||||| || |||||| Sbjct 2892 TCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCGTCCTCGAGCTGTTTGCCAGCGAAG 2833 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | |||||||| ||||| ||| || || |||||||| || || || ||||| Sbjct 2832 ATTAATCGCTGTTGG---TCTGGCGGGATACCCTCCTTATCCTGAATCTTGGCCTTCACA 2776 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || || || | || |||||||| ||||| ||||||||||| || || ||| Sbjct 2775 TTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTG 2716 Query 288460 ACGAATATCTGCAT 288473 || ||||||||||| Sbjct 2715 ACAAATATCTGCAT 2702 >seq46123 Length=6266 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || || |||| || ||||| || || || | || || |||||||| Sbjct 1596 TTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAA 1537 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | |||||| |||||| |||||||| |||||||| || |||||||| || Sbjct 1536 GATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTTGCTTTCACATT 1477 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || ||||| ||||| | || || || || || |||||||| || |||| ||||| || Sbjct 1476 CTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCCCGTCAAGGTCTTTAC 1417 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 1416 AAAGATCTGCAT 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1172363311524488