Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1202 143 6e-29
seq233574 138 3e-27
seq154141 138 3e-27
seq46948 136 9e-27
seq21692 134 3e-26
seq46123 125 2e-23
>seq1202
Length=22811
Score = 143 bits (158), Expect = 6e-29
Identities = 149/194 (77%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||||||||| || | ||| ||||||||||| || | |||||| || ||||||
Sbjct 3792 TCCTTTTGGATATTATAATCCGAGAGAGTGCGTCCGTCCTCGAGTTGTTTGCCAGCGAAG 3733
Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| || |||||||| ||||| ||| || || |||||||| || || || |||||
Sbjct 3732 ATTAGTCGCTGTTGG---TCTGGCGGGATACCCTCCTTATCCTGAATCTTGGCCTTCACA 3676
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || || || | || | |||||| ||||| ||||||||||| || || |||
Sbjct 3675 TTCTCAATTGAGTCCGAAGGCTCAATTTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTG 3616
Query 288460 ACGAATATCTGCAT 288473
|| |||||||||||
Sbjct 3615 ACAAATATCTGCAT 3602
>seq233574
Length=1449
Score = 138 bits (152), Expect = 3e-27
Identities = 173/235 (74%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | ||| || || || | ||| || || ||||| || ||||
Sbjct 309 CATG-CCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGT 251
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||||| || |||||||| || || || || || ||||||||||| || || |
Sbjct 250 CTGACAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTG---GT 194
Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
|| ||||| ||||| || ||||| || ||||| ||||| || || || || || ||||
Sbjct 193 CTGGGGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCG 134
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| || ||||| || ||||| ||||| ||||| ||||||||
Sbjct 133 GCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
>seq154141
Length=2423
Score = 138 bits (152), Expect = 3e-27
Identities = 173/235 (74%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | || || ||||| | || || || ||||| || ||||
Sbjct 309 CATG-CCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGT 251
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||||| || |||||||| || || || || || ||||||||||| || || |
Sbjct 250 CTGACAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTG---GT 194
Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
|| ||||| ||||| || |||||||| |||| ||||| || || || || |||||||
Sbjct 193 CTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCG 134
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| || ||||| || ||||| ||||| ||||| ||||||||
Sbjct 133 GCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
>seq46948
Length=6204
Score = 136 bits (150), Expect = 9e-27
Identities = 169/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||||| | || || || | || ||| ||||| || || ||||||| |
Sbjct 1525 CCACCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1466
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| ||||| |||||||| | || || || || |||||||| ||||| || |||
Sbjct 1465 AGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTG---GTCTGGC 1409
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|||||||| || || |||||||| || || |||||||| || || || || || | ||
Sbjct 1408 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCG 1349
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| || |||| ||||| || || ||||||||
Sbjct 1348 ACCTCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||| ||||| ||||| | ||||||||| ||||| || | || || || ||||||
Sbjct 1717 TCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAG 1658
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| | |||||| |||||| |||||||| |||||||| ||||||||||| ||
Sbjct 1657 ATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTCGCTTTCACATTC 1598
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || || ||||| | || || || || || || || || || |||| ||||| ||
Sbjct 1597 TCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACA 1538
Query 288463 AATATCTGCAT 288473
|| || |||||
Sbjct 1537 AAGATTTGCAT 1527
>seq21692
Length=9146
Score = 134 bits (148), Expect = 3e-26
Identities = 147/194 (76%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||||||||| || | ||| ||||| ||||| || | ||||| || ||||||
Sbjct 2892 TCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCGTCCTCGAGCTGTTTGCCAGCGAAG 2833
Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| | |||||||| ||||| ||| || || |||||||| || || || |||||
Sbjct 2832 ATTAATCGCTGTTGG---TCTGGCGGGATACCCTCCTTATCCTGAATCTTGGCCTTCACA 2776
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || || || | || |||||||| ||||| ||||||||||| || || |||
Sbjct 2775 TTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTG 2716
Query 288460 ACGAATATCTGCAT 288473
|| |||||||||||
Sbjct 2715 ACAAATATCTGCAT 2702
>seq46123
Length=6266
Score = 125 bits (138), Expect = 2e-23
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || || || || |||| || ||||| || || || | || || ||||||||
Sbjct 1596 TTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAA 1537
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||||| | |||||| |||||| |||||||| |||||||| || |||||||| ||
Sbjct 1536 GATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTTGCTTTCACATT 1477
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| ||||| ||||| | || || || || || |||||||| || |||| ||||| ||
Sbjct 1476 CTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCCCGTCAAGGTCTTTAC 1417
Query 288462 GAATATCTGCAT 288473
|| ||||||||
Sbjct 1416 AAAGATCTGCAT 1405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1172363311524488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |