Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq154141 120 3e-22 seq46948 120 3e-22 seq233574 107 2e-18 seq46123 104 3e-17 seq254520 91.5 2e-13 seq9266 91.5 2e-13 seq18504 86.0 7e-12 seq2863 86.0 7e-12 seq19321 84.2 2e-11 seq261949 82.4 8e-11 seq89059 82.4 8e-11 seq39836 82.4 8e-11 seq29733 82.4 8e-11 >seq154141 Length=2423 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||||| ||| |||||| || || ||||| || | ||| || || |||| || Sbjct 287 ACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCC 228 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||||||||| || || || || |||||||| | || | || ||||||||| | Sbjct 227 AACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 168 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || || | || | | || |||||||| ||||| || | ||| ||||| ||| Sbjct 167 ATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTCTTG 108 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || |||||||| || ||||| ||||| Sbjct 107 CCAGTCAGCGTCTTCACGAAGATCTGCAT 79 >seq46948 Length=6204 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| ||| |||||||||||||||||| || | || || || | Sbjct 1742 ACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCC 1683 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || ||||||||||| ||||| || | | ||| ||||| | ||| | || || || Sbjct 1682 GTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTT 1623 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || ||| | || | | | |||||| | || || || | || || Sbjct 1622 GTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAAT 1563 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| ||||| | ||||| |||||||||||||| Sbjct 1562 AGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| |||| ||||| || ||||||||||| ||||| || | || || || || Sbjct 1513 CGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCG 1454 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||||||||| || || || |||||||||||||| | || | | ||||||| Sbjct 1453 TCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 1394 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || | || | | || ||| || | || || || | ||||| Sbjct 1393 TCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATA 1334 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| | ||||| |||||||| ||||| Sbjct 1333 GTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| |||||||||| || |||||||||||| |||||||| | ||||| || | Sbjct 1285 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA 1226 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || || || || || ||||| || | | ||| ||||| | || | || || ||| Sbjct 1225 TCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTG 1166 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| ||| ||| | || | | | |||||| | || || || | || || Sbjct 1165 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATC 1106 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| | |||||||||||||| ||||| Sbjct 1105 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 >seq233574 Length=1449 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | ||| || || |||| || | |||||||||||| || Sbjct 270 CTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAA 211 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || || |||||||| | || | || ||||||||| ||| | || | || | Sbjct 210 GATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCC-TGAATCTTCGCCTTCACAT 152 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | || ||| |||| ||||| || | ||| ||||| ||||| || |||||||| | Sbjct 151 TCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCA 92 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 91 CGAAGATCTGCAT 79 >seq46123 Length=6266 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| |||||||| | || ||||| ||||| |||||||| | ||||| || | Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || | | ||| ||||| | ||| | || || ||| Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| ||| ||| | || | | | |||||| | || || || | || || Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| | |||||||||||||| ||||| Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 42030 TTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGC 42089 |||||||| | || || || |||| || ||||||||||| || || || ||||||||| Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039 Query 42090 TGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG 42149 ||||| | || | | |||||||||| ||| || || | || | | || ||| Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979 Query 42150 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || || || | ||||| |||||||| || | || || |||||||| ||||| Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| |||| ||||| || || |||||||| |||||||| | || || || | Sbjct 1391 CGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCA 1332 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || || || || || |||||||||||||| | || | | ||||||| Sbjct 1331 TCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 1272 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || ||| || || | || | | || ||| || | || || || | || || Sbjct 1271 TCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 1212 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || || || || ||||| ||||| Sbjct 1211 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 1177 >seq254520 Length=1288 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||||| |||| |||| | ||| |||||| ||||| || ||||||||||||| ||||| Sbjct 371 AAAATTGGCTCCGCGGCCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 312 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||| ||| Sbjct 311 CACCACTATACTACCGCGGA 292 >seq9266 Length=12749 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||||| |||| |||| | ||| |||||| ||||| || ||||||||||||| ||||| Sbjct 8525 AAAATTGGCTCCGCGGCCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 8466 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||| ||| Sbjct 8465 CACCACTATACTACCGCGGA 8446 >seq18504 Length=9794 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||||| |||| |||| | ||| |||||| ||||| || ||||||||||||| ||||| Sbjct 5155 AAAATCGGCTCCGCGGCCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 5096 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||| ||| Sbjct 5095 CACCACTATACTACCGCGGA 5076 >seq2863 Length=18256 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||||| |||| |||| | ||| |||||| ||||| || ||||||||||||| ||||| Sbjct 3664 AAAATTGGCTCCGCGGCCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 3605 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||||| ||| Sbjct 3604 TACCACTATACTACCGCGGA 3585 >seq19321 Length=9611 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| ||| |||| || | | ||| |||||| ||||| || ||||||||||||| |||| Sbjct 6204 AAAAGTTTGCTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATAC 6145 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| || ||| Sbjct 6144 TCACCACTATACTATCGCGGA 6124 >seq261949 Length=1236 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| || |||| || | | ||| |||||| ||||| || ||||||||||||| ||||| Sbjct 701 AAAACTTGCTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 642 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||| || ||| Sbjct 641 CACCACTATACTATCGCGGA 622 >seq89059 Length=4032 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| | |||||| || | | ||| |||||| ||||| || ||||||||||||| |||| Sbjct 3118 AAAAGTCTTCTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATAC 3059 Query 57058 TCACCACTATACTACCGAGG 57077 |||||||||||||| || || Sbjct 3058 TCACCACTATACTATCGCGG 3039 >seq39836 Length=6802 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| || |||| || | | ||| |||||| ||||| || ||||||||||||| ||||| Sbjct 3467 AAAAGTTGCTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 3408 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||| || ||| Sbjct 3407 CACCACTATACTATCGCGGA 3388 >seq29733 Length=7895 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| |||| ||||| || ||||||||||| |||||||| | || || || | Sbjct 710 CGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCA 651 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || || || || || || ||||||||||| | || | | ||||||| Sbjct 650 TCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 591 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || ||| || || | || | | || ||| || | || || || | || || Sbjct 590 TCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 531 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || || || || ||||| ||||| Sbjct 530 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539937253976640