Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq154141 120 3e-22
seq46948 120 3e-22
seq233574 107 2e-18
seq46123 104 3e-17
seq254520 91.5 2e-13
seq9266 91.5 2e-13
seq18504 86.0 7e-12
seq2863 86.0 7e-12
seq19321 84.2 2e-11
seq261949 82.4 8e-11
seq89059 82.4 8e-11
seq39836 82.4 8e-11
seq29733 82.4 8e-11
>seq154141
Length=2423
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||| ||||| ||| |||||| || || ||||| || | ||| || || |||| ||
Sbjct 287 ACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCC 228
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
| |||||||||||| || || || || |||||||| | || | || ||||||||| |
Sbjct 227 AACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 168
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
|| || || | || | | || |||||||| ||||| || | ||| ||||| |||
Sbjct 167 ATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTCTTG 108
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || |||||||| || ||||| |||||
Sbjct 107 CCAGTCAGCGTCTTCACGAAGATCTGCAT 79
>seq46948
Length=6204
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| |||||| |||| ||| |||||||||||||||||| || | || || || |
Sbjct 1742 ACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCC 1683
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || ||||||||||| ||||| || | | ||| ||||| | ||| | || || ||
Sbjct 1682 GTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTT 1623
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || ||| | || | | | |||||| | || || || | || ||
Sbjct 1622 GTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAAT 1563
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| ||||| | ||||| ||||||||||||||
Sbjct 1562 AGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527
Score = 113 bits (124), Expect = 5e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
||||| |||| ||||| || ||||||||||| ||||| || | || || || ||
Sbjct 1513 CGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCG 1454
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || ||||||||||| || || || |||||||||||||| | || | | |||||||
Sbjct 1453 TCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 1394
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || || | || | | || ||| || | || || || | |||||
Sbjct 1393 TCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATA 1334
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| |||||||| | ||||| |||||||| |||||
Sbjct 1333 GTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299
Score = 104 bits (114), Expect = 3e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
||||| |||||||||| || |||||||||||| |||||||| | ||||| || |
Sbjct 1285 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA 1226
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || || || || || ||||| || | | ||| ||||| | || | || || |||
Sbjct 1225 TCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTG 1166
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| ||| ||| | || | | | |||||| | || || || | || ||
Sbjct 1165 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATC 1106
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| |||||||| | |||||||||||||| |||||
Sbjct 1105 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
>seq233574
Length=1449
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | ||| || || |||| || | |||||||||||| ||
Sbjct 270 CTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAA 211
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || || |||||||| | || | || ||||||||| ||| | || | || |
Sbjct 210 GATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCC-TGAATCTTCGCCTTCACAT 152
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
|| | | || ||| |||| ||||| || | ||| ||||| ||||| || |||||||| |
Sbjct 151 TCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCA 92
Query 42196 CAAAGATTTGCAT 42208
| ||||| |||||
Sbjct 91 CGAAGATCTGCAT 79
>seq46123
Length=6266
Score = 104 bits (114), Expect = 3e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
||||| |||||||| | || ||||| ||||| |||||||| | ||||| || |
Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| || ||||| || | | ||| ||||| | ||| | || || |||
Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| ||| ||| | || | | | |||||| | || || || | || ||
Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| |||||||| | |||||||||||||| |||||
Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405
Score = 89.7 bits (98), Expect = 6e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 42030 TTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGC 42089
|||||||| | || || || |||| || ||||||||||| || || || |||||||||
Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039
Query 42090 TGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG 42149
||||| | || | | |||||||||| ||| || || | || | | || |||
Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979
Query 42150 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | || || || | ||||| |||||||| || | || || |||||||| |||||
Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
||||| |||| ||||| || || |||||||| |||||||| | || || || |
Sbjct 1391 CGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCA 1332
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || ||||| || || || || || |||||||||||||| | || | | |||||||
Sbjct 1331 TCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 1272
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
|| ||| || || | || | | || ||| || | || || || | || ||
Sbjct 1271 TCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 1212
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| || || || || || ||||| |||||
Sbjct 1211 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 1177
>seq254520
Length=1288
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
|||||| |||| |||| | ||| |||||| ||||| || ||||||||||||| |||||
Sbjct 371 AAAATTGGCTCCGCGGCCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 312
Query 57059 CACCACTATACTACCGAGGA 57078
|||||||||||||||| |||
Sbjct 311 CACCACTATACTACCGCGGA 292
>seq9266
Length=12749
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
|||||| |||| |||| | ||| |||||| ||||| || ||||||||||||| |||||
Sbjct 8525 AAAATTGGCTCCGCGGCCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 8466
Query 57059 CACCACTATACTACCGAGGA 57078
|||||||||||||||| |||
Sbjct 8465 CACCACTATACTACCGCGGA 8446
>seq18504
Length=9794
Score = 86.0 bits (94), Expect = 7e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
||||| |||| |||| | ||| |||||| ||||| || ||||||||||||| |||||
Sbjct 5155 AAAATCGGCTCCGCGGCCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 5096
Query 57059 CACCACTATACTACCGAGGA 57078
|||||||||||||||| |||
Sbjct 5095 CACCACTATACTACCGCGGA 5076
>seq2863
Length=18256
Score = 86.0 bits (94), Expect = 7e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
|||||| |||| |||| | ||| |||||| ||||| || ||||||||||||| |||||
Sbjct 3664 AAAATTGGCTCCGCGGCCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 3605
Query 57059 CACCACTATACTACCGAGGA 57078
||||||||||||||| |||
Sbjct 3604 TACCACTATACTACCGCGGA 3585
>seq19321
Length=9611
Score = 84.2 bits (92), Expect = 2e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
|||| ||| |||| || | | ||| |||||| ||||| || ||||||||||||| ||||
Sbjct 6204 AAAAGTTTGCTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATAC 6145
Query 57058 TCACCACTATACTACCGAGGA 57078
|||||||||||||| || |||
Sbjct 6144 TCACCACTATACTATCGCGGA 6124
>seq261949
Length=1236
Score = 82.4 bits (90), Expect = 8e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
|||| || |||| || | | ||| |||||| ||||| || ||||||||||||| |||||
Sbjct 701 AAAACTTGCTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 642
Query 57059 CACCACTATACTACCGAGGA 57078
||||||||||||| || |||
Sbjct 641 CACCACTATACTATCGCGGA 622
>seq89059
Length=4032
Score = 82.4 bits (90), Expect = 8e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
|||| | |||||| || | | ||| |||||| ||||| || ||||||||||||| ||||
Sbjct 3118 AAAAGTCTTCTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATAC 3059
Query 57058 TCACCACTATACTACCGAGG 57077
|||||||||||||| || ||
Sbjct 3058 TCACCACTATACTATCGCGG 3039
>seq39836
Length=6802
Score = 82.4 bits (90), Expect = 8e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
|||| || |||| || | | ||| |||||| ||||| || ||||||||||||| |||||
Sbjct 3467 AAAAGTTGCTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 3408
Query 57059 CACCACTATACTACCGAGGA 57078
||||||||||||| || |||
Sbjct 3407 CACCACTATACTATCGCGGA 3388
>seq29733
Length=7895
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
||||| |||| ||||| || ||||||||||| |||||||| | || || || |
Sbjct 710 CGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCA 651
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || ||||| || || || || || || ||||||||||| | || | | |||||||
Sbjct 650 TCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 591
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
|| ||| || || | || | | || ||| || | || || || | || ||
Sbjct 590 TCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 531
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| || || || || || ||||| |||||
Sbjct 530 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 539937253976640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |