Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 131 2e-25
seq154141 111 2e-19
seq46123 105 7e-18
seq233574 96.9 3e-15
seq219432 93.3 4e-14
seq29733 87.8 2e-12
>seq46948
Length=6204
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459
||||| || ||||| | | |||||||||||||||||||||| ||| | ||||||
Sbjct 1285 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA 1226
Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519
||||| |||||||| |||| |||| | | |||||||||||| || || |||||||||
Sbjct 1225 TCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTG 1166
Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579
|| ||| ||| ||| | | || | | |||| | | ||| ||||| | || | |
Sbjct 1165 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATC 1106
Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || || |||| || |||||||| ||||||||
Sbjct 1105 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||||| || || || | | |||||||||||||| ||||||||
Sbjct 1753 CCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAG 1694
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| || ||||||| |||| | | |||||||||||| ||
Sbjct 1693 AGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 1634
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||||||||| ||| || ||| | | || | || |||| | | ||| |||
Sbjct 1633 ATGCCTTCTTTGTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACC 1574
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | |||||||| |||| || || ||||| || |||||
Sbjct 1573 TCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||||| |||| || | | |||| ||||||||||||||||| ||
Sbjct 1069 CCGCCGCGGAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAA 1010
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || || ||||||||||| |||| | |||| || ||||||||||| || ||
Sbjct 1009 AGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGG 950
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | | ||| | | ||| |||
Sbjct 949 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACC 890
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617
|| | || | || || || || || ||||| || || |||||||||||
Sbjct 889 TCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 840
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459
||||| || | || | | |||| ||||||||||||||||||||| | || || |
Sbjct 1513 CGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCG 1454
Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519
|| ||||| || ||||||| | |||| || ||||| ||||| || || || || || |||
Sbjct 1453 TCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 1394
Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579
|| ||| || || | | || | | ||| | | ||| ||||| | || |
Sbjct 1393 TCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATA 1334
Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || || |||| || || ||||| ||||||||
Sbjct 1333 GTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299
>seq154141
Length=2423
Score = 111 bits (122), Expect = 2e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||| | ||| | ||| | |||||||||| || |||||||||||
Sbjct 306 GCCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGA 247
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||||| ||| || | || ||||| | | |||| ||||| || ||||| |||||
Sbjct 246 CAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGG 187
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || || | | || | | |||| ||| ||||||
Sbjct 186 GATGCCTTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCAC 127
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | ||| | || || |||||||| || || || || |||||||||
Sbjct 126 CTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78
>seq46123
Length=6266
Score = 105 bits (116), Expect = 7e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459
||||| || ||||||| | | || ||||| ||||||||||| ||| | ||| ||
Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560
Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519
||||| || || || || | |||| | | |||||||||||| || || |||||||||
Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500
Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579
|| ||| ||| ||| | | || | | |||| | | ||| ||||| | || | |
Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440
Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| || || |||| || |||||||| |||||||||
Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATG 1404
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | ||||| || | || | | |||| || |||||||||||||| |||
Sbjct 1404 GCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGA 1345
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || || ||||| ||||| |||| | |||| || ||||| ||||| || ||
Sbjct 1344 AAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGG 1285
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | | || | | ||| | | ||| ||
Sbjct 1284 GATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAAC 1225
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617
||| | || | || || || || || ||||| || || |||||||||||
Sbjct 1224 CTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 1174
>seq233574
Length=1449
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||| | ||| | || | |||||||||| || |||||||||||
Sbjct 306 GCCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGA 247
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||||| ||| || | || ||||| | | |||| ||||| || ||||| || ||
Sbjct 246 CAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGG 187
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| | || | || | | || | | ||| ||| |||||
Sbjct 186 GATGCCTTCCTTGTC-CTGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCA 128
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||| | ||| | || || |||||||| || || || || |||||||||
Sbjct 127 CCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78
>seq219432
Length=1578
Score = 93.3 bits (102), Expect = 4e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 153600 ATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCG 153659
|| || || |||||||||||||| |||| |||| |||||| | |||||||| | |
Sbjct 1015 ATGGATGCAAGATTACAGACGGCAATCTCATCGGGTGAGCTGTATTCGACGATCTCCGTG 956
Query 153660 CAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCG 153719
|| ||||| |||||| || |||| | ||| ||||| ||||||||||| | |
Sbjct 955 CACAGGTTTGAGCATTTAATTGTTCCCAGGTGTTGATGATTTGACTTGCGATTGCAGGAG 896
Query 153720 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC 153763
|| ||| | |||||| | || ||| ||||||| ||||| |||
Sbjct 895 TCCTTGTACAGCATGAATGGGTTGCCAGTCTCGATTTGCGCTTC 852
>seq29733
Length=7895
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | ||||| || | || | | |||| ||||||||||||||||| |||
Sbjct 723 GCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGA 664
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || || ||||| ||||| |||| | |||| || ||||| ||||| || ||
Sbjct 663 AAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGG 604
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | | || | | ||| | | ||| ||
Sbjct 603 GATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAAC 544
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617
||| | || | || || || || || ||||| || || |||||||||||
Sbjct 543 CTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 493269962541120
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