Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq46948 109 4e-19 seq46123 93.3 3e-14 >seq46948 Length=6204 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| ||||| || || ||||| |||||||||||| ||| | | | || Sbjct 1282 AAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATCC 1223 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||||||||| ||| | ||||| | ||||||||| || || ||||| ||||| Sbjct 1222 TCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCC 1163 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || ||||| ||| ||| | || |||| ||||| || || || | |||||| || Sbjct 1162 TGGATCTTTGC-TTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGT 1104 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| || |||||||| || |||||| Sbjct 1103 CTTGCCCGTCAAGGTCTTTACAAAGATCTGCATA 1070 >seq46123 Length=6266 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| ||||| || || || || |||||||||||| ||| | | | || Sbjct 1616 AAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCC 1557 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||| ||| | ||||| | ||||||||| ||| || ||||| ||||| Sbjct 1556 TCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCC 1497 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || ||||| ||| ||| | || |||| ||||| || || || | ||||| || Sbjct 1496 TGGATCTTTGC-TTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGT 1438 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| || |||||||| || ||||| Sbjct 1437 CTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355290820506860