Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq46123 118 1e-21
seq29733 109 5e-19
seq46948 107 2e-18
>seq46123
Length=6266
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | |||||| |||| || | || || ||||||||||| |||||||||
Sbjct 1403 CCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAA 1344
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || |||||||| || || |||||| ||||||||| || || ||
Sbjct 1343 AGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGG 1284
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||||||||| ||| || ||| | | |||| | ||| | ||| ||
Sbjct 1283 ATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACC 1224
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116
|| | || | || |||||||| || ||||| || || |||||||||||
Sbjct 1223 TCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 1174
Score = 89.7 bits (98), Expect = 5e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 126935 TTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGC 126994
||||||||| | |||||| || || ||||| || || || |||||| |||||||
Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039
Query 126995 TGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCC 127054
|| || || || || |||||||||||| ||| || ||| | | |||| | |||
Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979
Query 127055 GTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| ||| || || | || | ||||||||||||| ||||| ||||| ||||||||
Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920
>seq29733
Length=7895
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | |||||| |||| || | || || || |||||||| |||||||||
Sbjct 722 CCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAA 663
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || |||||||| || || |||||| |||||||| || || ||
Sbjct 662 AGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGG 603
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||||||||| ||| || ||| | | |||| | ||| | ||| ||
Sbjct 602 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACC 543
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116
|| | || | || |||||||| || ||||| || || |||||||||||
Sbjct 542 TCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 493
>seq46948
Length=6204
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | |||||| |||| || | || || || |||||||| ||||| |||
Sbjct 1525 CCACCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1466
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || || |||||| ||||||||| || || ||
Sbjct 1465 AGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGG 1406
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| || ||| | | |||| | ||| | ||||||
Sbjct 1405 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACC 1346
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || ||||| |||| || || ||||| ||||||||
Sbjct 1345 TCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | |||| |||||| || | |||||||| |||||||||||||| ||
Sbjct 1754 TCCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGA 1695
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| |||||| || || ||||| || || ||| ||||||| | ||| || || || ||
Sbjct 1694 GAGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGG 1635
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||| || |||||| ||| ||| || | | || | || ||| || ||||||
Sbjct 1634 GATGCCTTCTTTGTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGAC 1575
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||||| || |||| || || ||||| || |||||
Sbjct 1574 CTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | |||||| || | || | || || || |||||||| ||||||||
Sbjct 1069 CCGCCGCGGAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAA 1010
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || ||||| || || |||||| |||||| || || || ||
Sbjct 1009 AGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGG 950
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||||||||| ||| || ||| | | |||| | ||| | ||| ||
Sbjct 949 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACC 890
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116
|| | || | || |||||||| || ||||| || || |||||||||||
Sbjct 889 TCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472633553951040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |