Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq46948 114 3e-20 seq233574 102 2e-16 seq21692 100 7e-16 seq1202 100 7e-16 seq29733 91.5 3e-13 seq46123 87.8 4e-12 >seq46948 Length=6204 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || ||| ||||| | || || |||||||| | ||||||||| | | || Sbjct 1519 CGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTG 1460 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| |||||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 1459 CGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCC 1400 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| | ||| | | || || |||| Sbjct 1399 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGA 1340 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || |||||||| || || Sbjct 1339 GTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTG 1302 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || | ||| || || ||||||||||| | |||||||| | | || Sbjct 1747 CGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTG 1688 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| | | ||| |||||||| || ||| Sbjct 1687 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCT 1628 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| ||||| || | || ||| | | || || |||| Sbjct 1627 TCTTTGTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGA 1568 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| | || |||||||| ||||| Sbjct 1567 GTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTG 1530 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||| | || || || ||||||||||| | |||||| || | | ||| Sbjct 1291 CGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTA 1232 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || || || ||||||||||| | | ||| |||||||| || ||| Sbjct 1231 CGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCT 1172 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| |||||| ||||| || | | ||| | | || || |||| Sbjct 1171 TCTTTGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGG 1112 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| | || || ||||| || || Sbjct 1111 GTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTG 1074 >seq233574 Length=1449 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || |||||||| |||| ||||||||| | || || | || ||| Sbjct 290 AGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCT 231 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || ||||| ||||| |||||||| || || ||||| ||| Sbjct 230 TCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 171 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| || | | ||| | | || || || | ||| || ||| Sbjct 170 TGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTC 111 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 110 TTGCCAGTCAGCGTCTTCACGAAGATCTG 82 >seq21692 Length=9146 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||| ||||| ||||||||||||||||||| || || || | | ||| Sbjct 2922 CGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTG 2863 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || ||||| || || |||||||| | ||||| ||||| || || || Sbjct 2862 CGCCCGTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCC 2803 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| || | | ||| | | || || || | Sbjct 2802 TCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGG 2743 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || ||||| ||||| || || Sbjct 2742 GTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTG 2705 >seq1202 Length=22811 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||| ||||| ||||||||||||||||||| || || || | | ||| Sbjct 3822 CGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTG 3763 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || || || || || |||||||| || ||||| ||||| || || || Sbjct 3762 CGTCCGTCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGGATACCC 3703 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| || | | ||| | | || | || | Sbjct 3702 TCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAATTTCGAGG 3643 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || ||||| ||||| || || Sbjct 3642 GTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTG 3605 >seq29733 Length=7895 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || ||| ||||| | || || |||||||| | |||||| || | | || Sbjct 716 CGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTG 657 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||| || ||||| ||||| || ||||||||||| || ||||| Sbjct 656 CGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCC 597 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| |||||| |||| | ||| | | || || |||| Sbjct 596 TCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGA 537 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| || || || || Sbjct 536 GTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTG 499 >seq46123 Length=6266 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || ||| ||||| | || || || ||||| | |||||| || | | || Sbjct 1397 CGGAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTG 1338 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||| || ||||| ||||| || ||||||||||| || ||||| Sbjct 1337 CGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCC 1278 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| |||||| |||| | ||| | | || || |||| Sbjct 1277 TCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGA 1218 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| || || || || Sbjct 1217 GTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTG 1180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1171635040740532