Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq257780 149 6e-31 seq46948 116 4e-21 seq29733 111 2e-19 seq21692 107 2e-18 seq46123 102 8e-17 seq1202 98.7 1e-15 seq154141 89.7 5e-13 seq468507 86.0 6e-12 seq233574 86.0 6e-12 seq77159 82.4 8e-11 >seq257780 Length=1265 Score = 149 bits (164), Expect = 6e-31 Identities = 313/466 (67%), Gaps = 33/466 (7%) Strand=Plus/Minus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 ||||| ||||| || | ||||| || | | || ||||| |||||||| ||||| Sbjct 465 CAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTGAATGTCAAC 406 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC-GAAAAGAA 133013 || ||||| || || || || || ||||| || |||| || |||| ||| |||||||| Sbjct 405 CCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGC-AAACGACCCAGAAAAGAA 347 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || ||||| ||||| || || || ||||||||||| ||||||| || | | | Sbjct 346 AACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGAAACGTGGATTTTGAGTCACC 287 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 ||||| || ||||| || ||||| | ||| || || || | |||| | ||||| Sbjct 286 AATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTGTACTGCGTT 227 Query 133134 CAACAAA----CG---------------GAGTT--------TCTCTTCCGA--GGAACGC 133164 || | | || ||||| | | | ||| ||| | Sbjct 226 AAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGATAGGATCCT 167 Query 133165 --ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTT 133222 | ||| |||||||||||| |||||||| |||||||| | || || || || |||| Sbjct 166 TGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCAATTT 107 Query 133223 GAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCA 133282 | || || || ||||| || || || || || ||||||||| |||||| || || | Sbjct 106 GGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAACGTTCCACAA 47 Query 133283 GATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 | || |||||||| || |||||||| ||||| ||||| || || || Sbjct 46 GGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGCAAGAAC 1 >seq46948 Length=6204 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || | |||||||| || || ||| | || |||||| ||| | Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCA 38362 ||| | | | | |||| ||| |||| |||||||| || || ||||||| |||| Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCAT-CCCGCCGGACCA 1189 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| || | || | ||| |||||||| || || || | || || || ||| ||||| Sbjct 1190 ACAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAA 1249 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| |||||||| | || ||||||||||| |||| Sbjct 1250 CATTCAAAAGGAGTCAACCCTGCATTTGGTCTTGCG 1285 Score = 114 bits (126), Expect = 1e-20 Identities = 160/219 (73%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||||| || ||||| | || |||||| ||| Sbjct 1299 ATGCAGATCTTTGTGAAGACATTGACGGGCAAGACTATCACTCTGGAGGTCGAGCCCAGT 1358 Query 38304 GAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 ||| | || | |||| | || | || |||| ||||| |||||||| |||||| || Sbjct 1359 GACTCGATCGAG--AACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAAT-CCCGCCAGA 1414 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | || || || ||||| || |||| ||||||||| |||||| Sbjct 1415 CCAGCAGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCTCTCCGACTA 1474 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||||||| | || |||| |||| |||| Sbjct 1475 CAACATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCG 1513 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | ||||| ||||| || || | || |||||| | | | Sbjct 1527 ATGCAAATCTTTGTGAAGACATTGACGGGTAAAACTATTACTCTGGAGGTCGAGCCTAGC 1586 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | | |||| || |||| |||||||| || || || | |||||| Sbjct 1587 GACTCCATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1646 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || || ||||| || |||| ||||| ||| |||||||| Sbjct 1647 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACGCTCTCAGACTACAAT 1706 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || |||||||| | || ||||| |||||||||||| Sbjct 1707 ATTCAAAAGGAGTCTACACTGCACTTGGTGCTGCGT 1742 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| || || || | || || ||| ||| Sbjct 843 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 902 Query 38304 GAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 ||| | || | || | | || | || |||| ||||| |||||||| |||||| || Sbjct 903 GACTCGATCGAG--AATG-TGAAGGCTAAGATCCAAGACAAGGAGGGAAT-CCCGCCAGA 958 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| || || | || |||||||| || || || | |||||||| || || Sbjct 959 CCAACAGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTA 1018 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||| ||||||||| | || |||| Sbjct 1019 CAACATTCAAAAGGAATCAACCTTGCA 1045 >seq29733 Length=7895 Score = 111 bits (122), Expect = 2e-19 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| || || || | || || ||| ||| Sbjct 496 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 555 Query 38304 GAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 ||| | || | || | | || | || |||| ||||| |||||||| |||||| || Sbjct 556 GACTCGATCGAG--AATG-TGAAGGCTAAGATCCAAGACAAGGAGGGAAT-CCCGCCAGA 611 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| |||||||| || | || ||||||||||| || || | |||||||| ||| || Sbjct 612 CCAGCAGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTA 671 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||||||| | || |||| |||| |||| | | |||||| Sbjct 672 CAACATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGGC 723 >seq21692 Length=9146 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || ||||| || || || || || |||||| |||| || ||| | | Sbjct 2702 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTCG 2761 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 ||| | | | | || | || || | || || ||||| || |||||| ||||| Sbjct 2762 GACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTAT-CCCGCCAGACCA 2820 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||| ||||||||||| || |||| |||||| ||| || || || Sbjct 2821 ACAGCGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAA 2880 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| |||| ||||| |||| ||||| Sbjct 2881 TATCCAAAAGGAGTCGACTCTGCACCTGGTCCTGCG 2916 >seq46123 Length=6266 Score = 102 bits (112), Expect = 8e-17 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| || || || | || || ||| ||| Sbjct 1177 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 1236 Query 38304 GAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 ||| | || | || | | || | || |||| ||||| |||||||| |||||| || Sbjct 1237 GACTCGATCGAG--AATG-TGAAGGCCAAGATCCAAGACAAGGAGGGAAT-CCCGCCAGA 1292 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | || ||||||||||| || || | |||||||| ||| || Sbjct 1293 CCAGCAGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTA 1352 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| ||| | || |||| |||| |||| | | |||||| Sbjct 1353 CAACATTCAAAAAGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGGC 1404 >seq1202 Length=22811 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || ||||| || || || || || |||||| |||| | ||| | | Sbjct 3602 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTCG 3661 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 ||| | | | | || | || || | || || ||||| || |||||| ||||| Sbjct 3662 GACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTAT-CCCGCCAGACCA 3720 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||| |||||||| || || |||| ||||| ||| || || || Sbjct 3721 ACAGCGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAA 3780 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| |||| ||||| |||| ||||| Sbjct 3781 TATCCAAAAGGAGTCGACTCTGCACCTGGTCCTGCG 3816 >seq154141 Length=2423 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| ||||| || | || || ||| | | | Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGC 138 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | || || | | |||| || |||| ||||| || || || || | |||| Sbjct 139 GACTCGATTGAGAATG--TGAAGACGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACC 196 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | || || || ||| |||| |||| || || || ||||||| Sbjct 197 AGCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACA 256 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | || |||||| |||| || ||| || | || ||| Sbjct 257 ACATCCAGAAGGAGTCAACACTGCATCTGGTTCTCCGTCTGCGTGGTGGC 306 >seq468507 Length=525 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 38343 GAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402 || || ||||| | || || ||||| || |||| ||| ||||| ||| |||| ||||| Sbjct 353 GAAGGCATTCCGCCGGAGCAGCAGCGTCTGATTTTCGCTGGCAAGCAGTTGGAGGACGAT 294 Query 38403 CGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 |||| || ||||||| ||||||||||| | ||||||||||||||| |||| || Sbjct 293 TGCACGCTGTTAGACTACAGGATCCAAAAGGATTCAACGCTGCATTTGGTGGGGCGTCTG 234 >seq233574 Length=1449 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| ||||| || | || || ||| | | Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGT 138 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || || | | || | || || | ||||| || || || ||| | ||||| Sbjct 139 GACTCGATTGAGAATG-TGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCA 197 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | || || || ||| |||| |||| || || || |||||||| Sbjct 198 GCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAA 257 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| |||| || ||| || | || ||| Sbjct 258 CATCCAGAAGGAGTCAACGCTGCACCTGGTTCTTCGTCTGCGTGGTGGC 306 >seq77159 Length=4494 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 38343 GAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402 || || ||||| | || || ||||| || |||| ||| ||||| ||| |||| ||||| Sbjct 385 GAAGGCATTCCGCCGGAGCAGCAGCGTCTGATTTTCGCTGGCAAGCAGTTGGAGGACGAT 444 Query 38403 CGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 |||| || ||||||| ||||||||||| | | ||||||||||||| |||| || Sbjct 445 AGCACGCTGTTAGACTACAGGATCCAAAAGGATTCAATGCTGCATTTGGTGGGGCGTCTG 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497156783024640