Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq466127 123 1e-22 seq155539 113 2e-19 seq353987 96.9 1e-14 seq81195 96.9 1e-14 seq46948 87.8 7e-12 seq21692 84.2 9e-11 seq1202 84.2 9e-11 >seq466127 Length=530 Score = 123 bits (136), Expect = 1e-22 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 451245 CTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTG 451304 |||||||||| || || ||||| || ||||||||| ||||| || || || | | Sbjct 206 CTGAAGAAATCTCCTCAATGGTGCTGGTTAAAATGAAGGAAACTGCCGAGGCCTACCTAG 265 Query 451305 GTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGC 451364 | | || ||||| || || | |||||||| || |||||||| ||| ||||| | Sbjct 266 GCAAGACGGTCACTGACGCTGTCGTCACTGTTCCTGCCTATTTCAACGATAGTCAACGTC 325 Query 451365 AAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAAC 451424 |||| || |||||||||||| || | || | |||||||| || ||||||||||||| Sbjct 326 AAGCCACGAAAGATGCAGGAACCATCTCGGGCCTCAATGTTCTGCGCATTATTAATGAAC 385 Query 451425 CTACAGCAGCTGCTCTAGCATATGGACT 451452 | || || ||||| |||| || ||||| Sbjct 386 CGACGGCCGCTGCGATAGCTTACGGACT 413 >seq155539 Length=2399 Score = 113 bits (124), Expect = 2e-19 Identities = 247/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| ||||| ||||| || | ||||| ||| | ||||| | | || || Sbjct 523 TTTGCCCCTGAGGAAATATCTGCAATGGTCCTTGGACACATGAAGCAGATCGCTGAGGCT 582 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| | || | ||| ||| |||| || | ||||| || || || ||||| ||||| Sbjct 583 TATTTGGGGACCAAAGTCACTCATGCTGTTGTAACTGTGCCAGCCTACTTCAACGATGCT 642 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 |||||||| | || || || || || |||||| || ||||||| | || || || Sbjct 643 CAACGGCAGTCGACGAAGGACGCTGGTGTTATTGCAGGCCTAAATGTGTTGCGGATAATC 702 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 || |||||||| || || || | || || || | ||| || | || ||||||| Sbjct 703 AACGAACCTACTGCGGCGGCAATTGCTTACGGGTT-GGACAAGAAGGAGGGCGAGAAGAA 761 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 ||| | || || ||| |||| || || ||| |||| |||| | | | || Sbjct 762 -----TATCCTTGTGTTCGATCTTGGCGGCGGCACTTTTGATGTTTCTCTGATGACCATC 816 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || | || || || ||||| || |||| ||||||||| ||||| |||||||||||| Sbjct 817 GATAACGGAGTTTTCGAAGTTCTTGCTACCAGTGGTGATACGCATCTCGGAGGTGAAGAT 876 Query 451598 ATTGATAAT 451606 ||||| || Sbjct 877 TTTGATCAT 885 >seq353987 Length=793 Score = 96.9 bits (106), Expect = 1e-14 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 ||||| |||||||| | || | || | || |||| ||| | |||| | || ||| Sbjct 408 CCTGAGGAAATTTCCGCACTGTTGCTCATGAAGATGAGAGAGATTTCAGAGCTGTACATT 467 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || |||||||| || || || || || || ||||| | ||||| || |||||| Sbjct 468 GGAGAACCAGTTACCGAGGCTGTCATCACCGTGCCCGCGTGCTTCAACGACAGACAACGT 527 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || ||||| || ||||| | | ||| || ||||| || ||||| || | ||||||||| Sbjct 528 CAGGCAACCAAGGATGCCGCAACTATGGCCGGTTTGAAGGTTCTGCGGCTCATTAATGAA 587 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 || ||||| || |||| || ||||| | |||| Sbjct 588 CCCACAGCCCTCGCGATAGCCTACGGACTTGAAAAA 623 >seq81195 Length=4333 Score = 96.9 bits (106), Expect = 1e-14 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 ||||| |||||||| | || | || | || |||| ||| | |||| | || ||| Sbjct 3948 CCTGAGGAAATTTCCGCACTGTTGCTCATGAAGATGAGAGAGATTTCAGAGCTGTACATT 4007 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || |||||||| || || || || || || ||||| | ||||| || |||||| Sbjct 4008 GGAGAACCAGTTACCGAGGCTGTCATCACCGTGCCCGCGTGCTTCAACGACAGACAACGT 4067 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || ||||| || ||||| | | ||| || ||||| || ||||| || | ||||||||| Sbjct 4068 CAGGCAACCAAGGATGCCGCAACTATGGCCGGTTTGAAGGTTCTGCGGCTCATTAATGAA 4127 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 || ||||| || |||| || ||||| | |||| Sbjct 4128 CCCACAGCCCTCGCGATAGCTTACGGACTTGAAAAA 4163 >seq46948 Length=6204 Score = 87.8 bits (96), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||||||||| || || || || ||||||||||| || ||||| | | Sbjct 843 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 902 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || || || | | || || || ||||| ||||| ||||| || || || ||| Sbjct 903 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 962 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | || |||||||| |||||||| | || | | ||||| || Sbjct 963 CAGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTACAAC 1022 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| |||| | ||| |||| || |||| Sbjct 1023 ATTCAAAAGGAATCAACCTTGCACCTAGTCTTGCGACT 1060 >seq21692 Length=9146 Score = 84.2 bits (92), Expect = 9e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || || ||||| || || || ||||| | || Sbjct 2702 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTCG 2761 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | | || || ||||| |||||||| || || || || || ||| Sbjct 2762 GACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCAA 2821 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || ||||| ||| | || ||||| || || || || | ||| | ||||||||||| Sbjct 2822 CAGCGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAAT 2881 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 2882 ATCCAAAAGGAGTCGACTCTGCAC 2905 >seq1202 Length=22811 Score = 84.2 bits (92), Expect = 9e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || || ||||| || || || |||| | || Sbjct 3602 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTCG 3661 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | | || || ||||| |||||||| || || || || || ||| Sbjct 3662 GACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCAA 3721 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || |||| ||| | || |||||||| || || ||| | ||| | ||||||||||| Sbjct 3722 CAGCGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAAT 3781 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 3782 ATCCAAAAGGAGTCGACTCTGCAC 3805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1963507079754768