Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq466127 125 5e-23 seq155539 105 5e-17 seq338374 95.1 9e-14 seq338286 95.1 9e-14 seq460935 89.7 4e-12 >seq466127 Length=530 Score = 125 bits (138), Expect = 5e-23 Identities = 281/422 (67%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || || || || || | ||||| || || |||||||||||||| | || |||| Sbjct 422 TTCTTGTCGAGTCCGTAAGCTATCGCAGCGGCCGTCGGTTCATTAATAATGCGCAGAACA 363 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || | || ||||||||||||| |||||||| | ||| |||||| ||||| Sbjct 362 TTGAGGCCCGAGATGGTTCCTGCATCTTTCGTGGCTTGACGTTGACTATCGTTGAAATAG 303 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 ||||||||||| | || || ||||| || || || | || || || |||| Sbjct 302 GCAGGAACAGTGACGACAGCGTCAGTGACCGTCTTGCCTAGGTAGGCCTCGGCAGTTTCC 243 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTT 518404 ||||||||| | | |||||| || |||| ||| | |||| || || Sbjct 242 TTCATTTTAACCAGCACCATTGAGGAGATTTCTTCAGCATTGAATTGTTTTTTCTCTCCC 183 Query 518405 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTAT 518464 | || ||||| | | |||||| |||| ||| |||| |||||||||||| Sbjct 182 CGGTACTCGACTTCGATCTTTGGTTTGCCACCAGAATTGATAATCGTAAATGGCCAGTGC 123 Query 518465 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 518524 ||| ||| ||| ||| |||| | || || ||||||| || || |||||| Sbjct 122 TTCGCATCACTTTGGACAGCGGGGTCGTCGAAGCGTCGGCCAATTAGGCGCTTGGCATCA 63 Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 || | |||||| | || || || || | || | | || ||||| ||||| || || Sbjct 62 AAGACAGTATTCGACGGGTTCATAGCCACCTGGTTCCTAGCGGCATCCCCAATGAGGCGT 3 Query 518585 TC 518586 || Sbjct 2 TC 1 >seq155539 Length=2399 Score = 105 bits (116), Expect = 5e-17 Identities = 434/672 (65%), Gaps = 22/672 (3%) Strand=Plus/Minus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 |||| |||||||||||||||||| | | |||| || ||||| |||| |||| Sbjct 887 CGATGATCAAAATCTTCACCTCCGAGATGCGTATCACCACTGGTAGCAAGAACTTCGAAA 828 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||| | || | | || |||| |||||| || || || || | ||| || | | Sbjct 827 ACTCCGTTATCGATGGTCATCAGAGAAACATCAAAAGTGCCGCCGCCAAGATCGAACACA 768 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || | |||| ||| | | | | || || || | || || |||| || || ||||| Sbjct 767 AGGATATTC--TTC-TCGCCCTCCTTCTTGTCCAACCCGTAAGCAATTGCCGCCGCAGTA 711 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||| || || || | ||| ||||| || || ||||| || || || || || | Sbjct 710 GGTTCGTTGATTATCCGCAACACATTTAGGCCTGCAATAACACCAGCGTCCTTCGTCGAC 651 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | ||| | |||||| || || || || ||||| | ||| |||| ||| |||| | Sbjct 650 TGCCGTTGAGCATCGTTGAAGTAGGCTGGCACAGTTACAACAGCATGAGTGACTTTGGTC 591 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | |||||| || | || ||||| | | | | ||||| || |||| || Sbjct 590 CCCAAATAAGCCTCAGCGATCTGCTTCATGTGTCCAAGGACCATTGCAGATATTTCCTCA 531 Query 518381 GGGGAATATTGCTT-GGATTCATTTTGATATGATACTTCAAAATATGGTTT---ATTACC 518436 |||| | | ||| | | || || || || | || || || || | Sbjct 530 GGGGCAAACGCCTTCACCTCCCCACCGACAT-TGACCTCGAGGTAAGGCTTCCGGTT--C 474 Query 518437 AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TCATTAA 518495 | | ||| |||||||| || | ||| || || |||||||| || ||| ||| | Sbjct 473 TTC-TCAATCACTTTAAAGGGATATCTTTTTATGTCCGATTGAAC-CTCTGGATCAGAGA 416 Query 518496 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCT- 518554 | || || || || | ||| || ||||| || | || || ||||| ||| || | Sbjct 415 ACTCCCTGCCTATCAGTCGCTTGGCATCGAAGAGGGTGTTTTCTGGAT---TTGAAGTTA 359 Query 518555 --TGATATTTGGCTGCATCTCCAATCAGATGTTC---TGTCTCTGTAAATGAAACATATG 518609 |||| |||||| ||||| ||||| ||| | || || | | | || | |||||| | Sbjct 358 ACTGATTTTTGGCAGCATCGCCAATAAGACGCTCGTTTGCCGCAGAGAAGGCAACATAAG 299 Query 518610 ATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATA 518669 | ||||| | | || ||||| ||||| || || |||||||| || |||| | | Sbjct 298 AGGGAGTAATTCTGTTTCCTTGGTCATTTGCGATTATTTCAACGCGTCCGTTTTTGAAAA 239 Query 518670 CACCTACACAAC 518681 |||| |||| || Sbjct 238 CACCAACACTAC 227 >seq338374 Length=848 Score = 95.1 bits (104), Expect = 9e-14 Identities = 167/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648 ||||| || ||||||| ||||| ||||| || ||||| || || ||||| | || || Sbjct 542 AGAATGGCAGCTTGAACCGCAGCGCCATAAGCGACAGCCTCGTCCGGATTTATAGATTTG 483 Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGA 517707 || |||| |||||| ||||| || | | || |||| ||| |||||||||||||| | Sbjct 482 TTCAGTTCTTTACCGTTGAAGAAGTCTTGCAGCAGTT-TCTGCACCTTAGGAATACGCGT 424 Query 517708 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 517767 || || || || | || | || || ||| ||||| ||||| || | |||| | Sbjct 423 AGAGCCGCCTACCAGCACTACATCGTGGACCGAGGATTTGTCCAGCTTGGCATCCCGAAG 364 Query 517768 AACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAA 517824 |||| || ||||| || | | ||| | ||| | ||| | ||| ||||| ||||| Sbjct 363 GGCTTTCTCCACGGGATCCA-ATGTGCTGCGAAAGAGGTCCGCACACAGTTCCTCGAA 307 >seq338286 Length=848 Score = 95.1 bits (104), Expect = 9e-14 Identities = 167/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648 ||||| || ||||||| ||||| ||||| || ||||| || || ||||| | || || Sbjct 307 AGAATGGCAGCTTGAACCGCAGCGCCATAAGCGACAGCCTCGTCCGGATTTATAGATTTG 366 Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGA 517707 || |||| |||||| ||||| || | | || |||| ||| |||||||||||||| | Sbjct 367 TTCAGTTCTTTACCGTTGAAGAAGTCTTGCAGCAGTT-TCTGCACCTTAGGAATACGCGT 425 Query 517708 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 517767 || || || || | || | || || ||| ||||| ||||| || | |||| | Sbjct 426 AGAGCCGCCTACCAGCACTACATCGTGGACCGAGGATTTGTCCAGCTTGGCATCCCGAAG 485 Query 517768 AACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAA 517824 |||| || ||||| || | | ||| | ||| | ||| | ||| ||||| ||||| Sbjct 486 GGCTTTCTCCACGGGATCCA-ATGTGCTGCGAAAGAGGTCCGCACACAGTTCCTCGAA 542 >seq460935 Length=541 Score = 89.7 bits (98), Expect = 4e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 |||||| | | | || |||| |||||| || | ||| |||||||| |||||||| | | Sbjct 389 TTTGTCCTCGGTCTTGTCAATACCATAAGCCAGAGCGGCAGCAGTGGGTTCATTCACTAC 448 Query 518215 TCTCAAAACATTAAGACCAGC-AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 || |||| | || ||||| ||||| ||||| || ||||| ||||| | ||| | | Sbjct 449 TCGGTCAACAGTGAGGCCAGCCAATTCG-CCTGCCTCCTTAGTCGCTTGACGTTGGGCGT 507 Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | | ||| || ||||||||||| || || |||| Sbjct 508 CATCAAAGTAGGCAGGAACAGTTATCACTGCAT 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3756884321467576