Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq466127 125 5e-23
seq155539 105 5e-17
seq338374 95.1 9e-14
seq338286 95.1 9e-14
seq460935 89.7 4e-12
>seq466127
Length=530
Score = 125 bits (138), Expect = 5e-23
Identities = 281/422 (67%), Gaps = 0/422 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|| || || || || || || | ||||| || || |||||||||||||| | || ||||
Sbjct 422 TTCTTGTCGAGTCCGTAAGCTATCGCAGCGGCCGTCGGTTCATTAATAATGCGCAGAACA 363
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || || | || ||||||||||||| |||||||| | ||| |||||| |||||
Sbjct 362 TTGAGGCCCGAGATGGTTCCTGCATCTTTCGTGGCTTGACGTTGACTATCGTTGAAATAG 303
Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344
||||||||||| | || || ||||| || || || | || || || ||||
Sbjct 302 GCAGGAACAGTGACGACAGCGTCAGTGACCGTCTTGCCTAGGTAGGCCTCGGCAGTTTCC 243
Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTT 518404
||||||||| | | |||||| || |||| ||| | |||| || ||
Sbjct 242 TTCATTTTAACCAGCACCATTGAGGAGATTTCTTCAGCATTGAATTGTTTTTTCTCTCCC 183
Query 518405 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTAT 518464
| || ||||| | | |||||| |||| ||| |||| ||||||||||||
Sbjct 182 CGGTACTCGACTTCGATCTTTGGTTTGCCACCAGAATTGATAATCGTAAATGGCCAGTGC 123
Query 518465 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 518524
||| ||| ||| ||| |||| | || || ||||||| || || ||||||
Sbjct 122 TTCGCATCACTTTGGACAGCGGGGTCGTCGAAGCGTCGGCCAATTAGGCGCTTGGCATCA 63
Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584
|| | |||||| | || || || || | || | | || ||||| ||||| || ||
Sbjct 62 AAGACAGTATTCGACGGGTTCATAGCCACCTGGTTCCTAGCGGCATCCCCAATGAGGCGT 3
Query 518585 TC 518586
||
Sbjct 2 TC 1
>seq155539
Length=2399
Score = 105 bits (116), Expect = 5e-17
Identities = 434/672 (65%), Gaps = 22/672 (3%)
Strand=Plus/Minus
Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080
|||| |||||||||||||||||| | | |||| || ||||| |||| ||||
Sbjct 887 CGATGATCAAAATCTTCACCTCCGAGATGCGTATCACCACTGGTAGCAAGAACTTCGAAA 828
Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140
| ||| | || | | || |||| |||||| || || || || | ||| || | |
Sbjct 827 ACTCCGTTATCGATGGTCATCAGAGAAACATCAAAAGTGCCGCCGCCAAGATCGAACACA 768
Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200
|| | |||| ||| | | | | || || || | || || |||| || || |||||
Sbjct 767 AGGATATTC--TTC-TCGCCCTCCTTCTTGTCCAACCCGTAAGCAATTGCCGCCGCAGTA 711
Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260
||||| || || || | ||| ||||| || || ||||| || || || || || |
Sbjct 710 GGTTCGTTGATTATCCGCAACACATTTAGGCCTGCAATAACACCAGCGTCCTTCGTCGAC 651
Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320
|| | ||| | |||||| || || || || ||||| | ||| |||| ||| |||| |
Sbjct 650 TGCCGTTGAGCATCGTTGAAGTAGGCTGGCACAGTTACAACAGCATGAGTGACTTTGGTC 591
Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380
|| | |||||| || | || ||||| | | | | ||||| || |||| ||
Sbjct 590 CCCAAATAAGCCTCAGCGATCTGCTTCATGTGTCCAAGGACCATTGCAGATATTTCCTCA 531
Query 518381 GGGGAATATTGCTT-GGATTCATTTTGATATGATACTTCAAAATATGGTTT---ATTACC 518436
|||| | | ||| | | || || || || | || || || || |
Sbjct 530 GGGGCAAACGCCTTCACCTCCCCACCGACAT-TGACCTCGAGGTAAGGCTTCCGGTT--C 474
Query 518437 AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TCATTAA 518495
| | ||| |||||||| || | ||| || || |||||||| || ||| ||| |
Sbjct 473 TTC-TCAATCACTTTAAAGGGATATCTTTTTATGTCCGATTGAAC-CTCTGGATCAGAGA 416
Query 518496 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCT- 518554
| || || || || | ||| || ||||| || | || || ||||| ||| || |
Sbjct 415 ACTCCCTGCCTATCAGTCGCTTGGCATCGAAGAGGGTGTTTTCTGGAT---TTGAAGTTA 359
Query 518555 --TGATATTTGGCTGCATCTCCAATCAGATGTTC---TGTCTCTGTAAATGAAACATATG 518609
|||| |||||| ||||| ||||| ||| | || || | | | || | |||||| |
Sbjct 358 ACTGATTTTTGGCAGCATCGCCAATAAGACGCTCGTTTGCCGCAGAGAAGGCAACATAAG 299
Query 518610 ATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATA 518669
| ||||| | | || ||||| ||||| || || |||||||| || |||| | |
Sbjct 298 AGGGAGTAATTCTGTTTCCTTGGTCATTTGCGATTATTTCAACGCGTCCGTTTTTGAAAA 239
Query 518670 CACCTACACAAC 518681
|||| |||| ||
Sbjct 238 CACCAACACTAC 227
>seq338374
Length=848
Score = 95.1 bits (104), Expect = 9e-14
Identities = 167/238 (70%), Gaps = 4/238 (2%)
Strand=Plus/Minus
Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648
||||| || ||||||| ||||| ||||| || ||||| || || ||||| | || ||
Sbjct 542 AGAATGGCAGCTTGAACCGCAGCGCCATAAGCGACAGCCTCGTCCGGATTTATAGATTTG 483
Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGA 517707
|| |||| |||||| ||||| || | | || |||| ||| |||||||||||||| |
Sbjct 482 TTCAGTTCTTTACCGTTGAAGAAGTCTTGCAGCAGTT-TCTGCACCTTAGGAATACGCGT 424
Query 517708 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 517767
|| || || || | || | || || ||| ||||| ||||| || | |||| |
Sbjct 423 AGAGCCGCCTACCAGCACTACATCGTGGACCGAGGATTTGTCCAGCTTGGCATCCCGAAG 364
Query 517768 AACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAA 517824
|||| || ||||| || | | ||| | ||| | ||| | ||| ||||| |||||
Sbjct 363 GGCTTTCTCCACGGGATCCA-ATGTGCTGCGAAAGAGGTCCGCACACAGTTCCTCGAA 307
>seq338286
Length=848
Score = 95.1 bits (104), Expect = 9e-14
Identities = 167/238 (70%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648
||||| || ||||||| ||||| ||||| || ||||| || || ||||| | || ||
Sbjct 307 AGAATGGCAGCTTGAACCGCAGCGCCATAAGCGACAGCCTCGTCCGGATTTATAGATTTG 366
Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGA 517707
|| |||| |||||| ||||| || | | || |||| ||| |||||||||||||| |
Sbjct 367 TTCAGTTCTTTACCGTTGAAGAAGTCTTGCAGCAGTT-TCTGCACCTTAGGAATACGCGT 425
Query 517708 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 517767
|| || || || | || | || || ||| ||||| ||||| || | |||| |
Sbjct 426 AGAGCCGCCTACCAGCACTACATCGTGGACCGAGGATTTGTCCAGCTTGGCATCCCGAAG 485
Query 517768 AACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAA 517824
|||| || ||||| || | | ||| | ||| | ||| | ||| ||||| |||||
Sbjct 486 GGCTTTCTCCACGGGATCCA-ATGTGCTGCGAAAGAGGTCCGCACACAGTTCCTCGAA 542
>seq460935
Length=541
Score = 89.7 bits (98), Expect = 4e-12
Identities = 113/153 (74%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214
|||||| | | | || |||| |||||| || | ||| |||||||| |||||||| | |
Sbjct 389 TTTGTCCTCGGTCTTGTCAATACCATAAGCCAGAGCGGCAGCAGTGGGTTCATTCACTAC 448
Query 518215 TCTCAAAACATTAAGACCAGC-AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273
|| |||| | || ||||| ||||| ||||| || ||||| ||||| | ||| | |
Sbjct 449 TCGGTCAACAGTGAGGCCAGCCAATTCG-CCTGCCTCCTTAGTCGCTTGACGTTGGGCGT 507
Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306
| | ||| || ||||||||||| || || ||||
Sbjct 508 CATCAAAGTAGGCAGGAACAGTTATCACTGCAT 540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3756884321467576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |