Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq338374 230 3e-55 seq338286 226 4e-54 seq466127 188 9e-43 seq155539 131 2e-25 seq270649 87.8 2e-12 seq43131 87.8 2e-12 >seq338374 Length=848 Score = 230 bits (254), Expect = 3e-55 Identities = 450/665 (68%), Gaps = 0/665 (0%) Strand=Plus/Minus Query 6896 GGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCA 6955 ||||| || || |||| | ||| | | |||||| | ||| || ||| || | || Sbjct 665 GGAATGGTAGTGTTTCGCTTAATGAGGGCGGTCATTACACCGCCAGCAGTCTCCAAACCT 606 Query 6956 AGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCC 7015 | |||| || | || |||| |||| |||||| ||||||| || | ||||| Sbjct 605 AACGACAAGGGGGCGACATCCAGAAGTAGCAGGTCCTGAACAGCCTCTGACTTATCACCG 546 Query 7016 GTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTT 7075 | | ||||| ||||| |||| || || || ||||| ||||| || || || || | | Sbjct 545 CTCAGAATGGCAGCTTGAACCGCAGCGCCATAAGCGACAGCCTCGTCCGGATTTATAGAT 486 Query 7076 TTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGT 7135 || ||||||||||||||||| || | || | || || || | || || || || Sbjct 485 TTGTTCAGTTCTTTACCGTTGAAGAAGTCTTGCAGCAGTTTCTGCACCTTAGGAATACGC 426 Query 7136 GTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGA 7195 || || || || |||| || | || | || ||||| || | ||| | || ||| Sbjct 425 GTAGAGCCGCCTACCAGCACTACATCGTGGACCGAGGATTTGTCCAGCTTGGCATCCCGA 366 Query 7196 AGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAA 7255 || | ||| || || || |||| | || || | |||| |||||||||||| || Sbjct 365 AGGGCTTTCTCCACGGGATCCAATGTGCTGCGAAAGAGGTCCGCACACAGTTCCTCGAAG 306 Query 7256 CGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 || || || || ||||| || || || || | ||||| | ||| || ||||| | | Sbjct 305 CGGGCTCGTGTTATGGAGGTGTAAAAGTCGATACCGTCCATCAGCGAGTCTATTTCGACG 246 Query 7316 GTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGA 7375 | | ||| || | ||| | ||| ||||| || | |||||| || ||||| | |||| Sbjct 245 TTAGCTTGAGCGCTGGAACTGAGCGTGCGCTTGGCCCTCTCACAGGCAGTTCGGAGACGA 186 Query 7376 CGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAG 7435 || | |||||| || | || ||||||||| ||||| || || ||||||| | | Sbjct 185 CGGATAGCACGCTTATTTGTGTTAAGATCTTTCTTGTGTTTGCGCTTGAACTCTTGGGCG 126 Query 7436 AAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTC 7495 ||||| | || |||| || ||||| || ||||| ||||| || || ||||| ||||| Sbjct 125 AAGTGACTAACTAGTCGAGAGTCGAAGTCCTCACCTCCCAAATGGGTGTCCCCGGCGGTA 66 Query 7496 GCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCA 7555 | || ||||||||||| || |||| ||| | | || |||||||| ||||| || Sbjct 65 GACTTTACTTCAAAGATGCCGTCTTCGATGGAGAGAATGGACACATCAAAAGTACCTCCG 6 Query 7556 CCCAG 7560 || || Sbjct 5 CCAAG 1 >seq338286 Length=848 Score = 226 bits (250), Expect = 4e-54 Identities = 449/665 (68%), Gaps = 0/665 (0%) Strand=Plus/Plus Query 6896 GGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCA 6955 ||||| || || |||| | ||| | | |||||| | |||||| ||| || | || Sbjct 184 GGAATGGTAGTGTTTCGCTTAATGAGGGCGGTCATTACACCACCAGCAGTCTCCAAACCT 243 Query 6956 AGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCC 7015 | |||| || | || |||| |||| |||||| ||||||| || | ||||| Sbjct 244 AACGACAAGGGGGCGACATCCAGAAGTAGCAGGTCCTGAACAGCCTCTGACTTATCACCG 303 Query 7016 GTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTT 7075 | | ||||| ||||| |||| || || || ||||| ||||| || || || || | | Sbjct 304 CTCAGAATGGCAGCTTGAACCGCAGCGCCATAAGCGACAGCCTCGTCCGGATTTATAGAT 363 Query 7076 TTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGT 7135 || ||||||||||||||||| || | || | || || || | || || || || Sbjct 364 TTGTTCAGTTCTTTACCGTTGAAGAAGTCTTGCAGCAGTTTCTGCACCTTAGGAATACGC 423 Query 7136 GTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGA 7195 || || || || |||| || | || | || ||||| || | ||| | || ||| Sbjct 424 GTAGAGCCGCCTACCAGCACTACATCGTGGACCGAGGATTTGTCCAGCTTGGCATCCCGA 483 Query 7196 AGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAA 7255 || | ||| || || || |||| | || || | |||| |||||||||||| || Sbjct 484 AGGGCTTTCTCCACGGGATCCAATGTGCTGCGAAAGAGGTCCGCACACAGTTCCTCGAAG 543 Query 7256 CGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 || || || || ||||| || || || || | ||||| | ||| || ||||| | | Sbjct 544 CGGGCTCGTGTTATGGAGGTGTAAAAGTCGATACCGTCCATCAGCGAGTCTATTTCGACG 603 Query 7316 GTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGA 7375 | | ||| || | ||| | || ||||| || | |||||| || ||||| | |||| Sbjct 604 TTAGCTTGAGCACTGGAACTGAGTGTGCGCTTAGCCCTCTCACAGGCAGTTCGGAGACGA 663 Query 7376 CGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAG 7435 || | |||||| || | || ||||||||| ||||| || |||||||||| | Sbjct 664 CGGATAGCACGCTTATTTGTGTTAAGATCTTTCTTGTGTTTGCGCTTAAACTCTTGGGCA 723 Query 7436 AAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTC 7495 ||||| | || |||| || ||||| || ||||| ||||| || || || || ||||| Sbjct 724 AAGTGACTAACCAGTCGAGAGTCGAAGTCCTCACCTCCCAAATGGGTGTCTCCGGCGGTA 783 Query 7496 GCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCA 7555 | || ||||||||||| || |||| ||| | | || |||||||| ||||| || Sbjct 784 GACTTTACTTCAAAGATGCCGTCTTCGATGGAGAGAATGGACACATCAAAAGTACCTCCG 843 Query 7556 CCCAG 7560 || || Sbjct 844 CCAAG 848 >seq466127 Length=530 Score = 188 bits (208), Expect = 9e-43 Identities = 364/534 (68%), Gaps = 5/534 (1%) Strand=Plus/Minus Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| | || ||||||||||| || |||| ||| | | || |||||||| Sbjct 530 CCGGCGGTAGACTTTACTTCAAAGATGCCGTCTTCGATGGAGAGAATGGACACATCAAAA 471 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTCGTCTTTGTTCTTATCGAG 7605 ||||| || || || || || ||||| || || ||| || | | ||||| ||||| Sbjct 470 GTACCTCCGCCAAGATCGAAGATGAGCACATTGCGT-TCAGAGCCGACCTTCTTGTCGAG 412 Query 7606 ACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGC 7665 ||||| || || || || ||||| |||||||||||||| || ||| || ||||| | Sbjct 411 TCCGTAAGCTATCGCAGCGGCCGTCGGTTCATTAATAATGCGCAGAACATTGAGGCCCGA 352 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 || ||| | ||||||||||| ||||| ||||| |||||| || ||||| || || || Sbjct 351 GATGGTTCCTGCATCTTTCGTGGCTTGACGTTGACTATCGTTGAAATAGGCAGGAACAGT 292 Query 7726 TACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGT 7785 ||||| ||||| ||||| |||| || || || | || || | || |||||||| Sbjct 291 GACGACAGCGTCAGTGACCGTCTTGCCTAGGTAGGCCTCGGCAGTTTCCTTCATTTTAAC 232 Query 7786 AAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAAC 7845 || ||||| || || || |||||||| || ||||| | || || | || || Sbjct 231 CAGCACCATTGAGGAGATTTCTTCAGCATTGAATTGTTTTTTCTCTCCCCGGTACTCGAC 172 Query 7846 TTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATC 7905 ||| ||| | ||||| | ||| | ||||| | || | | ||| | ||| ||| Sbjct 171 TTCGATCTTTGGTTTGCCACCAGAA---TTGATAATCGTAAATGGCCAGTGCTTCGCATC 115 Query 7906 GTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGT 7965 |||||| |||| || || || || || ||||| |||||||| || || Sbjct 114 ACTTTGGACAGCGGGGTCGTCGAAGCGTCGGCCAATTAGGCGCTTGGCATCAAAGACAGT 55 Query 7966 GTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 || |||||||| || |||||| | || || ||||| || || ||||| Sbjct 54 ATTCGACGGGTTCATAGCCACCTGGTTCCTAGCGGCATCCCCAATGAGGCGTTC 1 >seq155539 Length=2399 Score = 131 bits (144), Expect = 2e-25 Identities = 250/365 (68%), Gaps = 5/365 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||||||||| || | || ||||| || ||| || ||||| || | || Sbjct 882 ATCAAAATCTTCACCTCCGAGATGCGTATCACCACTGGTAGCAAGAACTTCGAAAACTCC 823 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || ||| | | || ||||||||||| || || || || || || || | || | Sbjct 822 GTTATCGATGGTCATCAGAGAAACATCAAAAGTGCCGCCGCCAAGATCGAACACAAGGAT 763 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| | || ||||| || | ||||| || || |||||||| || ||||| Sbjct 762 ATTCTTCTCGCCCTC---CTTCTTGTCCAACCCGTAAGCAATTGCCGCCGCAGTAGGTTC 706 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || || || || ||| || ||||| |||||| | || || ||||||| || | Sbjct 705 GTTGATTATCCGCAACACA-TTTAGGCCTGCAATAACACCAGCGTCCTTCGTCGACTGCC 647 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 |||| | |||||| |||||||| || || ||||| || || | |||||||| | || | Sbjct 646 GTTGAGCATCGTTGAAGTAGGCTGGCACAGTTACAACAGCATGAGTGACTTTGGTCCCCA 587 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 ||| | || ||||| | ||||| | ||| ||||| | || || || |||| | Sbjct 586 AATAAGCCTCAGCGATCTGCTTCATGTGTCCAAGGACCATTGCAGATATTTCCTCAGGGG 527 Query 7815 CAAAC 7819 ||||| Sbjct 526 CAAAC 522 >seq270649 Length=1181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 184241 AGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAATTGCAAGTGTT 184300 || ||||||||||||||| | ||||||||||| || | ||| |||| || || || Sbjct 317 AGTGGAAAAACACCGTAACGGTCACGACCAACCACGCTCAAACCCGCAACAGCCAGGGTC 258 Query 184301 TTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCT 184360 || || ||||| || || |||| || || ||||| |||| | |||||||||| Sbjct 257 TTAGCTGAATCTCCCTCCGTAAGGATGAGCGTACAGGCGGCAGAATTCTTGGTACCGGCG 198 Query 184361 TTATTGGCATCGTCGAGTTTTGGAATACCCGTTATTTT 184398 | |||||||| || | |||||| || ||| | | ||| Sbjct 197 TCGTTGGCATCATCTAATTTTGGGATGCCCTTGAGTTT 160 >seq43131 Length=6507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 184241 AGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAATTGCAAGTGTT 184300 || ||||||||||||||| | ||||||||||| || | ||| |||| || || || Sbjct 4719 AGTGGAAAAACACCGTAACGGTCACGACCAACCACGCTCAAACCCGCAACAGCCAGGGTC 4660 Query 184301 TTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCT 184360 || || ||||| || || |||| || || ||||| |||| | |||||||||| Sbjct 4659 TTAGCTGAATCTCCCTCCGTAAGGATGAGCGTACAGGCGGCAGAATTCTTGGTACCGGCG 4600 Query 184361 TTATTGGCATCGTCGAGTTTTGGAATACCCGTTATTTT 184398 | |||||||| || | |||||| || ||| | | ||| Sbjct 4599 TCGTTGGCATCATCTAATTTTGGGATGCCCTTGAGTTT 4562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631302980972640