Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq21692 143 6e-29
seq46123 136 9e-27
seq1202 134 3e-26
seq46948 132 1e-25
seq29733 127 5e-24
seq154141 113 1e-19
>seq21692
Length=9146
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||| ||||| ||||| ||||| ||||| | ||||| | ||| || |||
Sbjct 2910 ACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCGTCCTCG 2851
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || |||||||| | ||| ||||||||||| || || || || || || |||
Sbjct 2850 AGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGA 2791
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || |||||||| | ||||||| || ||||| ||||| | |||||
Sbjct 2790 ATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATAGTCTTC 2731
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||||| || || | |||||
Sbjct 2730 CCGGTTAGGGTTTTGACAAATATCTGCAT 2702
>seq46123
Length=6266
Score = 136 bits (150), Expect = 9e-27
Identities = 164/222 (74%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||| ||| || ||||| | || || ||||||||||| |||||||||| ||| || |
Sbjct 1395 GAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCG 1336
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||||||||| || || || ||||| ||||| || |||||||| || || || ||
Sbjct 1335 GCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTC 1276
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098
|||||||| || || ||| || ||||| || | ||| ||| || || || ||
Sbjct 1275 CTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 1219
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||| ||||| || || | ||||| ||||| | |||||
Sbjct 1218 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 1177
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || || || || ||||| |||||||||| |||||| | ||||| || ||||||
Sbjct 1607 TGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTCAAGCTGC 1548
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| ||||||||||| | | |||||||| || || |||||||||||||| || || |||
Sbjct 1547 TTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTT 1488
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || |||||||| | ||| || || || || |||| |||||| || |||
Sbjct 1487 GCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCCCGTC 1428
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|| || ||||| || | |||||
Sbjct 1427 AAGGTCTTTACAAAGATCTGCAT 1405
Score = 95.1 bits (104), Expect = 3e-14
Identities = 131/182 (72%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 194962 TTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGT 195021
|||||||||| || || | || ||||||||||||||||| || ||||| ||||| ||
Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039
Query 195022 TGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081
|||||||| || || || || ||||| || || || ||| || ||||| || | |||
Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTC- 1980
Query 195082 GAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138
||| || || || || || | || || || ||||| ||||| || || | |||
Sbjct 1979 --ACTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGC 1922
Query 195139 AT 195140
||
Sbjct 1921 AT 1920
>seq1202
Length=22811
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||| ||||| ||||| ||||| ||||| | ||||| | || || |||
Sbjct 3810 ACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGTCCGTCCTCG 3751
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| || || || |||||||| ||||| ||||||||||| || || || || || || |||
Sbjct 3750 AGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGA 3691
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || |||||||| | ||||||| || | ||| ||||| | |||||
Sbjct 3690 ATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAATTTCGAGGGTGATAGTCTTC 3631
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||||| || || | |||||
Sbjct 3630 CCGGTTAGGGTTTTGACAAATATCTGCAT 3602
>seq46948
Length=6204
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || ||||| |||||||| |||||||||| |||||| | ||||| || || ||
Sbjct 1273 TGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATCCTCAAGTTGT 1214
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || |||||||| | | |||||||| || || |||||||||||||| || || |||
Sbjct 1213 TTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCCTGGATCTTT 1154
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || |||||||| | ||| || || || ||||||| |||||| || |||
Sbjct 1153 GCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGTCTTGCCCGTC 1094
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|| || ||||| || | |||||
Sbjct 1093 AAGGTCTTTACAAAGATCTGCAT 1071
Score = 127 bits (140), Expect = 5e-24
Identities = 162/222 (73%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||| ||| || ||||| | || || || |||||||| |||||||| | ||| || |
Sbjct 1061 GAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCG 1002
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
||||||||||| || || || || ||||| ||||| ||||||||||| || || || ||
Sbjct 1001 GCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTC 942
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098
|||||||| || || ||| || ||||| || | ||| ||| || || || ||
Sbjct 941 CTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 885
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||| ||||| || || | ||||| ||||| | |||||
Sbjct 884 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 843
Score = 125 bits (138), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || || ||||| |||||||||||||| || | || || | || || ||||||||
Sbjct 1730 GTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTCGAGCTG 1671
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| |||||||| | | |||||||| || || |||||||||||||| || || ||
Sbjct 1670 CTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTT 1611
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|| || |||||||||| ||| | || || || || |||| || || || ||
Sbjct 1610 CGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTACCCGT 1551
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
||| || || || || | ||||||
Sbjct 1550 CAATGTCTTCACAAAGATTTGCAT 1527
Score = 122 bits (134), Expect = 2e-22
Identities = 161/222 (73%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||| ||| || ||||| | || || || |||||||| ||||| |||| || || |
Sbjct 1517 GAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCG 1458
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|| ||||||||||||||||| || ||||| ||||| || |||||||| || || || ||
Sbjct 1457 ACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTC 1398
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098
||||| || || || ||| |||||||| || | ||| ||| || || || ||
Sbjct 1397 CTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTC---ACTGGGCTCGACCTCCAG 1341
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||| || ||||| || || || || | |||||
Sbjct 1340 AGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299
>seq29733
Length=7895
Score = 127 bits (140), Expect = 5e-24
Identities = 162/222 (73%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||| ||| || ||||| | || || || |||||||| |||||||||| ||| || |
Sbjct 714 GAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCG 655
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||||||||| || || || ||||| || || || |||||||| || || || ||
Sbjct 654 GCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTC 595
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098
|||||||| || || ||| || ||||| || | ||| ||| || || || ||
Sbjct 594 CTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 538
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||| ||||| || || | ||||| ||||| | |||||
Sbjct 537 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 496
>seq154141
Length=2423
Score = 113 bits (124), Expect = 1e-19
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| || || || || ||||| || || || ||||| || | || || | || |||||
Sbjct 288 AACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTC 229
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| ||||||||| || ||||| || ||||| ||||||||||| |||||||| ||||| ||
Sbjct 228 CAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTG 169
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || ||| || |||||||| | ||| ||||| || || || | |||||
Sbjct 168 GATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTCTT 109
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || ||||| | |||||
Sbjct 108 GCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102624228461732
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