Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq21692 143 6e-29 seq46123 136 9e-27 seq1202 134 3e-26 seq46948 132 1e-25 seq29733 127 5e-24 seq154141 113 1e-19 >seq21692 Length=9146 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| ||||| ||||| ||||| | ||||| | ||| || ||| Sbjct 2910 ACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCGTCCTCG 2851 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || |||||||| | ||| ||||||||||| || || || || || || ||| Sbjct 2850 AGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGA 2791 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | ||||||| || ||||| ||||| | ||||| Sbjct 2790 ATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATAGTCTTC 2731 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | ||||| Sbjct 2730 CCGGTTAGGGTTTTGACAAATATCTGCAT 2702 >seq46123 Length=6266 Score = 136 bits (150), Expect = 9e-27 Identities = 164/222 (74%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| ||| || ||||| | || || ||||||||||| |||||||||| ||| || | Sbjct 1395 GAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCG 1336 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||||||||| || || || ||||| ||||| || |||||||| || || || || Sbjct 1335 GCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTC 1276 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 |||||||| || || ||| || ||||| || | ||| ||| || || || || Sbjct 1275 CTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 1219 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || | ||||| ||||| | ||||| Sbjct 1218 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 1177 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || || ||||| |||||||||| |||||| | ||||| || |||||| Sbjct 1607 TGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTCAAGCTGC 1548 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||||||||| | | |||||||| || || |||||||||||||| || || ||| Sbjct 1547 TTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTT 1488 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || |||||||| | ||| || || || || |||| |||||| || ||| Sbjct 1487 GCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCCCGTC 1428 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || | ||||| Sbjct 1427 AAGGTCTTTACAAAGATCTGCAT 1405 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 194962 TTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGT 195021 |||||||||| || || | || ||||||||||||||||| || ||||| ||||| || Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039 Query 195022 TGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 |||||||| || || || || ||||| || || || ||| || ||||| || | ||| Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTC- 1980 Query 195082 GAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138 ||| || || || || || | || || || ||||| ||||| || || | ||| Sbjct 1979 --ACTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGC 1922 Query 195139 AT 195140 || Sbjct 1921 AT 1920 >seq1202 Length=22811 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| ||||| ||||| ||||| | ||||| | || || ||| Sbjct 3810 ACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGTCCGTCCTCG 3751 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || |||||||| ||||| ||||||||||| || || || || || || ||| Sbjct 3750 AGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGA 3691 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | ||||||| || | ||| ||||| | ||||| Sbjct 3690 ATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAATTTCGAGGGTGATAGTCTTC 3631 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | ||||| Sbjct 3630 CCGGTTAGGGTTTTGACAAATATCTGCAT 3602 >seq46948 Length=6204 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||| |||||||| |||||||||| |||||| | ||||| || || || Sbjct 1273 TGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATCCTCAAGTTGT 1214 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | | |||||||| || || |||||||||||||| || || ||| Sbjct 1213 TTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCCTGGATCTTT 1154 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || |||||||| | ||| || || || ||||||| |||||| || ||| Sbjct 1153 GCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGTCTTGCCCGTC 1094 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || | ||||| Sbjct 1093 AAGGTCTTTACAAAGATCTGCAT 1071 Score = 127 bits (140), Expect = 5e-24 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| ||| || ||||| | || || || |||||||| |||||||| | ||| || | Sbjct 1061 GAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCG 1002 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||||||||| || || || || ||||| ||||| ||||||||||| || || || || Sbjct 1001 GCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTC 942 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 |||||||| || || ||| || ||||| || | ||| ||| || || || || Sbjct 941 CTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 885 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || | ||||| ||||| | ||||| Sbjct 884 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 843 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| |||||||||||||| || | || || | || || |||||||| Sbjct 1730 GTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTCGAGCTG 1671 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | | |||||||| || || |||||||||||||| || || || Sbjct 1670 CTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTT 1611 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || |||||||||| ||| | || || || || |||| || || || || Sbjct 1610 CGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTACCCGT 1551 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | |||||| Sbjct 1550 CAATGTCTTCACAAAGATTTGCAT 1527 Score = 122 bits (134), Expect = 2e-22 Identities = 161/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| ||| || ||||| | || || || |||||||| ||||| |||| || || | Sbjct 1517 GAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCG 1458 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||||||||||||||| || ||||| ||||| || |||||||| || || || || Sbjct 1457 ACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTC 1398 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 ||||| || || || ||| |||||||| || | ||| ||| || || || || Sbjct 1397 CTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTC---ACTGGGCTCGACCTCCAG 1341 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || ||||| || || || || | ||||| Sbjct 1340 AGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299 >seq29733 Length=7895 Score = 127 bits (140), Expect = 5e-24 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| ||| || ||||| | || || || |||||||| |||||||||| ||| || | Sbjct 714 GAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCG 655 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||||||||| || || || ||||| || || || |||||||| || || || || Sbjct 654 GCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTC 595 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 |||||||| || || ||| || ||||| || | ||| ||| || || || || Sbjct 594 CTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 538 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || | ||||| ||||| | ||||| Sbjct 537 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 496 >seq154141 Length=2423 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || || || ||||| || || || ||||| || | || || | || ||||| Sbjct 288 AACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTC 229 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||||||| || ||||| || ||||| ||||||||||| |||||||| ||||| || Sbjct 228 CAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTG 169 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || |||||||| | ||| ||||| || || || | ||||| Sbjct 168 GATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTCTT 109 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 108 GCCAGTCAGCGTCTTCACGAAGATCTGCAT 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102624228461732