Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq46948 125 5e-24 seq46123 125 5e-24 seq29733 116 2e-21 seq233574 109 4e-19 seq154141 100 2e-16 >seq46948 Length=6204 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | || ||| || |||||||| ||||| || ||| | || | || Sbjct 1511 CAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCGTC 1452 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || |||||||| || ||||| ||||||||| |||| | ||||||||||| Sbjct 1451 TTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTC 1392 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || ||| | ||||| |||| || ||| || || | || || || Sbjct 1391 CTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATAGT 1332 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| | ||||||||||||||||||||| Sbjct 1331 CTTGCCCGTCAATGTCTTCACAAAGATCTGCATA 1298 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || |||||||| || || |||||| | || |||| || || ||||| |||||||| Sbjct 1034 TTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAA 975 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| || |||||| |||| | ||||||||||| ||||| || || | Sbjct 974 GATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCAC--A 917 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || ||||| |||| || |||||| || | || || || || || || || || || Sbjct 916 TTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTA 857 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 856 ACGAAGATCTGCAT 843 >seq46123 Length=6266 Score = 125 bits (138), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | || |||||| |||||||| || || |||||| | || |||| Sbjct 1389 CAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATC 1330 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || |||||||| |||||||| || ||||| ||||||||| |||| | ||||||||||| Sbjct 1329 TTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTC 1270 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| || || || || ||||| |||| || |||||| || | || || Sbjct 1269 TTGGATCTTGGCCTTCAC--ATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 1212 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || || || || || ||||||||||| Sbjct 1211 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 1177 Score = 107 bits (118), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 34803 TTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGC 34862 || || || || ||| | || | || || ||||| || |||||||| || ||||| ||| Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039 Query 34863 TGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATT 34920 |||||| |||| | |||||||||||| ||||| || || || || ||||| | Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCGATCGAGT 1981 Query 34921 CACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCA 34980 ||| || |||||| || | || || ||||| || || | || |||||||||||||||| Sbjct 1980 CACTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCA 1921 Query 34981 TA 34982 || Sbjct 1920 TA 1919 >seq29733 Length=7895 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | || ||| || |||||||| || || |||||| | || |||| Sbjct 708 CAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATC 649 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || |||||||| |||||||| || || || ||||||||| |||| | ||||||||||| Sbjct 648 TTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTC 589 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| || || || || ||||| |||| || |||||| || | || || Sbjct 588 TTGGATCTTAGCCTTCAC--ATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 531 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || || || || || ||||||||||| Sbjct 530 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 496 >seq233574 Length=1449 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || |||| ||| || || ||||| Sbjct 269 TCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAG 210 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||||||| | || | || |||||||| ||||||| || || || Sbjct 209 ATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCAC--AT 152 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||||| |||| | ||| || || | |||||||| || || || || ||||||| Sbjct 151 TCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCA 92 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 91 CGAAGATCTGCAT 79 >seq154141 Length=2423 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || |||| ||| || || ||||| Sbjct 269 TCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAG 210 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||||||| | || | || |||||||| |||||| || || || Sbjct 209 ATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGTCTTCAC--AT 152 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||||| || | | ||| || || | |||||||| || || || || ||||||| Sbjct 151 TCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCA 92 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 91 CGAAGATCTGCAT 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322725013733088