Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 125 5e-24
seq46123 125 5e-24
seq29733 116 2e-21
seq233574 109 4e-19
seq154141 100 2e-16
>seq46948
Length=6204
Score = 125 bits (138), Expect = 5e-24
Identities = 156/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||| ||| | || ||| || |||||||| ||||| || ||| | || | ||
Sbjct 1511 CAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCGTC 1452
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| ||||| || |||||||| || ||||| ||||||||| |||| | |||||||||||
Sbjct 1451 TTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTC 1392
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| || ||| | ||||| |||| || ||| || || | || || ||
Sbjct 1391 CTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATAGT 1332
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||| | |||||||||||||||||||||
Sbjct 1331 CTTGCCCGTCAATGTCTTCACAAAGATCTGCATA 1298
Score = 111 bits (122), Expect = 1e-19
Identities = 142/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| || |||||||| || || |||||| | || |||| || || ||||| ||||||||
Sbjct 1034 TTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAA 975
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| ||||| || |||||| |||| | ||||||||||| ||||| || || |
Sbjct 974 GATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCAC--A 917
Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967
| || ||||| |||| || |||||| || | || || || || || || || || ||
Sbjct 916 TTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTA 857
Query 34968 ACAAAGATCTGCAT 34981
|| |||||||||||
Sbjct 856 ACGAAGATCTGCAT 843
>seq46123
Length=6266
Score = 125 bits (138), Expect = 5e-24
Identities = 158/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||| ||| | || |||||| |||||||| || || |||||| | || ||||
Sbjct 1389 CAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATC 1330
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| |||||||| |||||||| || ||||| ||||||||| |||| | |||||||||||
Sbjct 1329 TTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTC 1270
Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
||||| || || || || ||||| |||| || |||||| || | || ||
Sbjct 1269 TTGGATCTTGGCCTTCAC--ATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 1212
Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || || || || || |||||||||||
Sbjct 1211 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 1177
Score = 107 bits (118), Expect = 1e-18
Identities = 134/182 (74%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 34803 TTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGC 34862
|| || || || ||| | || | || || ||||| || |||||||| || ||||| |||
Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039
Query 34863 TGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATT 34920
|||||| |||| | |||||||||||| ||||| || || || || ||||| |
Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCGATCGAGT 1981
Query 34921 CACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCA 34980
||| || |||||| || | || || ||||| || || | || ||||||||||||||||
Sbjct 1980 CACTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCA 1921
Query 34981 TA 34982
||
Sbjct 1920 TA 1919
>seq29733
Length=7895
Score = 116 bits (128), Expect = 2e-21
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||| ||| | || ||| || |||||||| || || |||||| | || ||||
Sbjct 708 CAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATC 649
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| |||||||| |||||||| || || || ||||||||| |||| | |||||||||||
Sbjct 648 TTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTC 589
Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
||||| || || || || ||||| |||| || |||||| || | || ||
Sbjct 588 TTGGATCTTAGCCTTCAC--ATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 531
Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || || || || || |||||||||||
Sbjct 530 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 496
>seq233574
Length=1449
Score = 109 bits (120), Expect = 4e-19
Identities = 141/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || || | || | || |||| ||| || || |||||
Sbjct 269 TCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAG 210
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || |||||||||||| | || | || |||||||| ||||||| || || ||
Sbjct 209 ATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCAC--AT 152
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| ||||| |||| | ||| || || | |||||||| || || || || |||||||
Sbjct 151 TCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCA 92
Query 34969 CAAAGATCTGCAT 34981
| |||||||||||
Sbjct 91 CGAAGATCTGCAT 79
>seq154141
Length=2423
Score = 100 bits (110), Expect = 2e-16
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || || | || | || |||| ||| || || |||||
Sbjct 269 TCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAG 210
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || |||||||||||| | || | || |||||||| |||||| || || ||
Sbjct 209 ATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGTCTTCAC--AT 152
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| ||||| || | | ||| || || | |||||||| || || || || |||||||
Sbjct 151 TCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCA 92
Query 34969 CAAAGATCTGCAT 34981
| |||||||||||
Sbjct 91 CGAAGATCTGCAT 79
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322725013733088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |