Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq219432 152 6e-32
seq257780 118 1e-21
>seq219432
Length=1578
Score = 152 bits (168), Expect = 6e-32
Identities = 364/543 (67%), Gaps = 8/543 (1%)
Strand=Plus/Minus
Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATC-TAACCCAGGACA 48163
|||||||| ||||| ||||| || ||||| || || | ||| | || || |||||
Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCA-ACAGTCGAATAGACCTGGACA 656
Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223
|||| |||| ||| | | ||| | || | || || | |||||||| ||
Sbjct 655 CTCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGGTC 596
Query 48224 TGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT 48283
|| ||||| ||||| || | ||| | |||||| ||||||| |||| | || |
Sbjct 595 AGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTTTT 536
Query 48284 TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTAC 48343
|| || | ||| | || || || | ||||||||||||| || || || | |
Sbjct 535 GCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAGGC 476
Query 48344 ACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAA 48403
||||| ||||| || || || ||||| | ||| | ||| || ||||| ||||| | |
Sbjct 475 GCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGGAG 416
Query 48404 CATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGC-TC 48462
|||||| || | ||| || || ||||| || |||| ||| || | || || || ||
Sbjct 415 CATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACC-CTTGCTTC 357
Query 48463 TTATATTACTAA--TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCG 48520
| || | || ||| | ||| || || || || |||| ||||| || |||||| |
Sbjct 356 TGATGCAATGAACGTTG--AGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACTG 299
Query 48521 TTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580
|| | ||||||||||| || ||||| || || || |||| | | ||| |||||||
Sbjct 298 CTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAACT 239
Query 48581 AGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCA 48640
||||| || || | || || || ||||| | ||||||||||| || | |||||
Sbjct 238 GGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACCA 179
Query 48641 TTT 48643
||
Sbjct 178 CTT 176
>seq257780
Length=1265
Score = 118 bits (130), Expect = 1e-21
Identities = 242/355 (68%), Gaps = 10/355 (3%)
Strand=Plus/Minus
Query 18832 CAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTT 18891
|| ||||| || || || | ||||| || || || || |||||||| ||| ||||
Sbjct 594 CAGTTCATGCCGATCAAGTCCACAGGAAGAGCGTCAGTCAGAAATTCCACTTCGATATCA 535
Query 18892 ACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAA--GATGTT 18949
|| || || ||||| | | | || | || | | |||||| | |||||
Sbjct 534 ACAGCTTCCCGCATAATCGCTTCTACGCGCTCCTTA----GAGGGTTTGTTTCTGATGTG 479
Query 18950 TA--AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATT 19007
| |||| | ||| || || ||| || |||||||| || | ||||| | ||||||
Sbjct 478 TCGGAACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATT 419
Query 19008 AGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGA 19067
||||| || || ||||| || || | || || | |||||| || || ||||| ||
Sbjct 418 GCTGAATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGA 359
Query 19068 TCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGC 19127
||||||||||| | || ||||| |||||||| || || || | ||| | ||| |
Sbjct 358 CCCAGAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGA-AACGTGG 300
Query 19128 ATCATTA-TTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181
|| | | | | |||||| || |||||||| |||||||||||||| ||||| ||
Sbjct 299 ATTTTGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGG 245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 558719312041440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |