Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq219432 152 6e-32 seq257780 118 1e-21 >seq219432 Length=1578 Score = 152 bits (168), Expect = 6e-32 Identities = 364/543 (67%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATC-TAACCCAGGACA 48163 |||||||| ||||| ||||| || ||||| || || | ||| | || || ||||| Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCA-ACAGTCGAATAGACCTGGACA 656 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 |||| |||| ||| | | ||| | || | || || | |||||||| || Sbjct 655 CTCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGGTC 596 Query 48224 TGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT 48283 || ||||| ||||| || | ||| | |||||| ||||||| |||| | || | Sbjct 595 AGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTTTT 536 Query 48284 TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTAC 48343 || || | ||| | || || || | ||||||||||||| || || || | | Sbjct 535 GCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAGGC 476 Query 48344 ACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAA 48403 ||||| ||||| || || || ||||| | ||| | ||| || ||||| ||||| | | Sbjct 475 GCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGGAG 416 Query 48404 CATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGC-TC 48462 |||||| || | ||| || || ||||| || |||| ||| || | || || || || Sbjct 415 CATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACC-CTTGCTTC 357 Query 48463 TTATATTACTAA--TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCG 48520 | || | || ||| | ||| || || || || |||| ||||| || |||||| | Sbjct 356 TGATGCAATGAACGTTG--AGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACTG 299 Query 48521 TTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 || | ||||||||||| || ||||| || || || |||| | | ||| ||||||| Sbjct 298 CTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAACT 239 Query 48581 AGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCA 48640 ||||| || || | || || || ||||| | ||||||||||| || | ||||| Sbjct 238 GGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACCA 179 Query 48641 TTT 48643 || Sbjct 178 CTT 176 >seq257780 Length=1265 Score = 118 bits (130), Expect = 1e-21 Identities = 242/355 (68%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 18832 CAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTT 18891 || ||||| || || || | ||||| || || || || |||||||| ||| |||| Sbjct 594 CAGTTCATGCCGATCAAGTCCACAGGAAGAGCGTCAGTCAGAAATTCCACTTCGATATCA 535 Query 18892 ACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAA--GATGTT 18949 || || || ||||| | | | || | || | | |||||| | ||||| Sbjct 534 ACAGCTTCCCGCATAATCGCTTCTACGCGCTCCTTA----GAGGGTTTGTTTCTGATGTG 479 Query 18950 TA--AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATT 19007 | |||| | ||| || || ||| || |||||||| || | ||||| | |||||| Sbjct 478 TCGGAACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATT 419 Query 19008 AGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGA 19067 ||||| || || ||||| || || | || || | |||||| || || ||||| || Sbjct 418 GCTGAATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGA 359 Query 19068 TCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGC 19127 ||||||||||| | || ||||| |||||||| || || || | ||| | ||| | Sbjct 358 CCCAGAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGA-AACGTGG 300 Query 19128 ATCATTA-TTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 || | | | | |||||| || |||||||| |||||||||||||| ||||| || Sbjct 299 ATTTTGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGG 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558719312041440