Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq466127 95.1 1e-13 seq460935 93.3 3e-13 seq46948 93.3 3e-13 seq46123 89.7 4e-12 >seq466127 Length=530 Score = 95.1 bits (104), Expect = 1e-13 Identities = 246/370 (66%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 |||||| | |||||||| || || ||||||| || | || | || | |||| || Sbjct 52 AATACTGTCTTTGATGCCAAGCGCCTAATTGGCCGACGCTTCGACGACCCCGCTGTCCAA 111 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 ||| |||||| ||||| || ||| | ||| | ||| ||||| | || ||| Sbjct 112 AGTGATGCGAAGCACTGGCCATTTACGATTATCAATTCTGGTGGCAAACCAAAGATCGAA 171 Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | | | | ||| |||||||| | ||| |||| || || ||||| | Sbjct 172 GTCGAGTACCGG-GGAGAGAAAAAACAATTCAATGCTGAAGAAATCTCCTCAATGGTGCT 230 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTT-ACGGATGCAGTAA 550406 | |||||||| |||| ||| || | | || ||||| | | || || || || Sbjct 231 GGTTAAAATGAAGGAAACTGCCGAGGCCTACCTAGG-CAAGACGGTCACTGACGCTGTCG 289 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | ||||| || || ||||| || || ||||||||||| || |||||||| ||| | Sbjct 290 TCACTGTTCCTGCCTATTTCAACGATAGTCAACGTCAAGCCACGAAAGATGCAGGAACCA 349 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | | || || |||||||| || ||||| |||||||| || || ||||| | || || | Sbjct 350 TCTCGGGCCTCAATGTTCTGCGCATTATTAATGAACCGACGGCCGCTGCGATAGCTTACG 409 Query 550527 GACTTGATAA 550536 |||| || || Sbjct 410 GACTCGACAA 419 >seq460935 Length=541 Score = 93.3 bits (102), Expect = 3e-13 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| |||||||| || || || ||| ||||| | ||||||||||| ||||| || | Sbjct 540 ATGCAGTGATAACTGTTCCTGCCTACTTTGATGACGCCCAACGTCAAGCGACTAAGGAGG 481 Query 550458 CTGGACGTATT-GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 | || || ||| ||||| || | |||| || | | |||||||| |||||||| || Sbjct 480 CAGG-CGAATTGGCTGGCCTCACTGTTGACCGAGTAGTGAATGAACCCACTGCTGCCGCT 422 Query 550517 CTTGCATATGGACTTGATAA 550536 || || ||||| |||| || Sbjct 421 CTGGCTTATGGTATTGACAA 402 >seq46948 Length=6204 Score = 93.3 bits (102), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 563274 AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTT 563333 |||| | || |||| | ||| |||||||||| || || | |||||| |||||||| Sbjct 1042 AAGGTTGATTCCTTTTG-AATGTTGTAATCAGAAAGGGTGCGGCCATCTTCGAGTTGTTT 984 Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393 |||||||| || |||| || || || || || ||||| || || ||||| || || Sbjct 983 GCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGC 924 Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| || | ||| || | | || ||||||| ||| || || ||||| Sbjct 923 CTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAG 864 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||||||||||| || ||||| Sbjct 863 GGTTTTAACGAAGATCTGCAT 843 >seq46123 Length=6266 Score = 89.7 bits (98), Expect = 4e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 563283 TTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAA 563342 |||||| ||| |||||||| | || || | |||||| || ||||| |||||||| Sbjct 1368 TTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAA 1309 Query 563343 AATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGC 563402 || |||| ||||| || || || ||||| || || ||||| || || || || Sbjct 1308 GATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATT 1249 Query 563403 CTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAAC 563462 ||| || | ||| || | | || ||||||| ||| || || ||||| |||||||| Sbjct 1248 CTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAAC 1189 Query 563463 GAAAATTTGCAT 563474 ||| || ||||| Sbjct 1188 GAAGATCTGCAT 1177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4003784723914040