Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq466127 95.1 1e-13
seq460935 93.3 3e-13
seq46948 93.3 3e-13
seq46123 89.7 4e-12
>seq466127
Length=530
Score = 95.1 bits (104), Expect = 1e-13
Identities = 246/370 (66%), Gaps = 4/370 (1%)
Strand=Plus/Plus
Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228
|||||| | |||||||| || || ||||||| || | || | || | |||| ||
Sbjct 52 AATACTGTCTTTGATGCCAAGCGCCTAATTGGCCGACGCTTCGACGACCCCGCTGTCCAA 111
Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288
||| |||||| ||||| || ||| | ||| | ||| ||||| | || |||
Sbjct 112 AGTGATGCGAAGCACTGGCCATTTACGATTATCAATTCTGGTGGCAAACCAAAGATCGAA 171
Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347
| | | | | ||| |||||||| | ||| |||| || || ||||| |
Sbjct 172 GTCGAGTACCGG-GGAGAGAAAAAACAATTCAATGCTGAAGAAATCTCCTCAATGGTGCT 230
Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTT-ACGGATGCAGTAA 550406
| |||||||| |||| ||| || | | || ||||| | | || || || ||
Sbjct 231 GGTTAAAATGAAGGAAACTGCCGAGGCCTACCTAGG-CAAGACGGTCACTGACGCTGTCG 289
Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466
| ||||| || || ||||| || || ||||||||||| || |||||||| ||| |
Sbjct 290 TCACTGTTCCTGCCTATTTCAACGATAGTCAACGTCAAGCCACGAAAGATGCAGGAACCA 349
Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526
| | || || |||||||| || ||||| |||||||| || || ||||| | || || |
Sbjct 350 TCTCGGGCCTCAATGTTCTGCGCATTATTAATGAACCGACGGCCGCTGCGATAGCTTACG 409
Query 550527 GACTTGATAA 550536
|||| || ||
Sbjct 410 GACTCGACAA 419
>seq460935
Length=541
Score = 93.3 bits (102), Expect = 3e-13
Identities = 106/140 (76%), Gaps = 2/140 (1%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
||||||| |||||||| || || || ||| ||||| | ||||||||||| ||||| || |
Sbjct 540 ATGCAGTGATAACTGTTCCTGCCTACTTTGATGACGCCCAACGTCAAGCGACTAAGGAGG 481
Query 550458 CTGGACGTATT-GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516
| || || ||| ||||| || | |||| || | | |||||||| |||||||| ||
Sbjct 480 CAGG-CGAATTGGCTGGCCTCACTGTTGACCGAGTAGTGAATGAACCCACTGCTGCCGCT 422
Query 550517 CTTGCATATGGACTTGATAA 550536
|| || ||||| |||| ||
Sbjct 421 CTGGCTTATGGTATTGACAA 402
>seq46948
Length=6204
Score = 93.3 bits (102), Expect = 3e-13
Identities = 142/201 (71%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 563274 AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTT 563333
|||| | || |||| | ||| |||||||||| || || | |||||| ||||||||
Sbjct 1042 AAGGTTGATTCCTTTTG-AATGTTGTAATCAGAAAGGGTGCGGCCATCTTCGAGTTGTTT 984
Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393
|||||||| || |||| || || || || || ||||| || || ||||| || ||
Sbjct 983 GCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGC 924
Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||| || | ||| || | | || ||||||| ||| || || |||||
Sbjct 923 CTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAG 864
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||||||||||| || |||||
Sbjct 863 GGTTTTAACGAAGATCTGCAT 843
>seq46123
Length=6266
Score = 89.7 bits (98), Expect = 4e-12
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 563283 TTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAA 563342
|||||| ||| |||||||| | || || | |||||| || ||||| ||||||||
Sbjct 1368 TTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAA 1309
Query 563343 AATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGC 563402
|| |||| ||||| || || || ||||| || || ||||| || || || ||
Sbjct 1308 GATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATT 1249
Query 563403 CTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAAC 563462
||| || | ||| || | | || ||||||| ||| || || ||||| ||||||||
Sbjct 1248 CTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAAC 1189
Query 563463 GAAAATTTGCAT 563474
||| || |||||
Sbjct 1188 GAAGATCTGCAT 1177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4003784723914040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |