Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq46123 132 4e-26
seq46948 127 2e-24
seq21692 102 6e-17
seq1202 98.7 8e-16
seq431821 91.5 1e-13
>seq46123
Length=6266
Score = 132 bits (146), Expect = 4e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314
|| || || ||||| ||||| ||||| || || || |||||||||| | ||| | | ||
Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560
Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374
|| || | ||||| ||||| || ||||| | |||||| || || || |||||||||||
Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500
Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434
|| || || ||| ||| ||| | || | || ||| | || || || ||||| | |
Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440
Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| ||||| || || || |||||||| |||||||||
Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATG 1404
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331
||| ||||||||||| || |||||||||| | || | | |||| || | || || ||
Sbjct 1374 GGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCC 1315
Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391
||||| |||| ||||| || || ||||| || || || || ||||| || || ||
Sbjct 1314 GGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTT 1255
Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451
||| | || | | |||| | || || || ||||| | || |||||||| | ||
Sbjct 1254 CACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGT 1195
Query 101452 TTTTACAAATATCTGCATGG 101471
||| || || ||||||||||
Sbjct 1194 TTTAACGAAGATCTGCATGG 1175
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 101291 TTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGT 101350
|||||||||| || || | | || || | |||||||| ||||| |||| |||||
Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039
Query 101351 TGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCA 101410
|| || ||||| || || || || || || || || || ||| | || | | ||||
Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979
Query 101411 GACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
| || || || ||||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920
>seq46948
Length=6204
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314
|| || || ||||| ||||| || || ||||| || |||||||||| | ||| | | ||
Sbjct 1285 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA 1226
Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374
|| || | ||| || || || || ||||| | |||||| || ||||| |||||||||||
Sbjct 1225 TCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTG 1166
Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434
|| || || ||| ||| ||| | || | || ||| | || || || || || | |
Sbjct 1165 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATC 1106
Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||| || || || |||||||| ||||||||
Sbjct 1105 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || || ||||| || ||||| |||||||| || | || || | | | || ||
Sbjct 1735 ACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTCG 1676
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| |||||||| || || ||||| | |||||| || || || ||||||||||| || ||
Sbjct 1675 AGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGG 1616
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| ||| | || | | ||| | || || || ||||| | |||||
Sbjct 1615 ATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTA 1556
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || || || ||||| || |||||
Sbjct 1555 CCCGTCAATGTCTTCACAAAGATTTGCAT 1527
>seq21692
Length=9146
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || || ||||| ||||| ||||| | || ||| | | || || | ||
Sbjct 2904 TGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCGTCCTCGAGCTGT 2845
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || || || |||||||| || ||||| || || || ||||| ||||| ||
Sbjct 2844 TTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGAATCTTG 2785
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | | ||| || | || ||||| || |||| || || ||||||
Sbjct 2784 GCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATAGTCTTCCCGGTT 2725
Query 101447 AAAGTTTTTACAAATATCTGCATG 101470
| ||||| |||||||||||||||
Sbjct 2724 AGGGTTTTGACAAATATCTGCATG 2701
>seq1202
Length=22811
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || || ||||| ||||| ||||| | || ||| | | || || | |||
Sbjct 3804 TGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGTCCGTCCTCGAGTTGT 3745
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || || | |||||||| || ||||| || || || ||||| ||||| ||
Sbjct 3744 TTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGAATCTTG 3685
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | | ||| || | || | ||| || |||| || || ||||||
Sbjct 3684 GCCTTCACATTCTCAATTGAGTCCGAAGGCTCAATTTCGAGGGTGATAGTCTTCCCGGTT 3625
Query 101447 AAAGTTTTTACAAATATCTGCATG 101470
| ||||| |||||||||||||||
Sbjct 3624 AGGGTTTTGACAAATATCTGCATG 3601
>seq431821
Length=605
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||| ||||||||||||||||| |||||||| | || | || ||||| |||
Sbjct 86 TGAAGTGTAGATTCTTTTTGTATCTTGTAATCCATCAATGTGTGTCCGTCATCCAACTGC 145
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381
|| |||||||| || || |||||||| || || |||||||| || ||||||| ||
Sbjct 146 TTGCCTGCAAAGATTAAGCGCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTCAA 200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 393948599535372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |