Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq46123 132 4e-26 seq46948 127 2e-24 seq21692 102 6e-17 seq1202 98.7 8e-16 seq431821 91.5 1e-13 >seq46123 Length=6266 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || ||||| ||||| ||||| || || || |||||||||| | ||| | | || Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | ||||| ||||| || ||||| | |||||| || || || ||||||||||| Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || || || ||| ||| ||| | || | || ||| | || || || ||||| | | Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || |||||||| ||||||||| Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATG 1404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| ||||||||||| || |||||||||| | || | | |||| || | || || || Sbjct 1374 GGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCC 1315 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 ||||| |||| ||||| || || ||||| || || || || ||||| || || || Sbjct 1314 GGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTT 1255 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| | || | | |||| | || || || ||||| | || |||||||| | || Sbjct 1254 CACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGT 1195 Query 101452 TTTTACAAATATCTGCATGG 101471 ||| || || |||||||||| Sbjct 1194 TTTAACGAAGATCTGCATGG 1175 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 101291 TTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGT 101350 |||||||||| || || | | || || | |||||||| ||||| |||| ||||| Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039 Query 101351 TGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCA 101410 || || ||||| || || || || || || || || || ||| | || | | |||| Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979 Query 101411 GACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920 >seq46948 Length=6204 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || ||||| ||||| || || ||||| || |||||||||| | ||| | | || Sbjct 1285 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA 1226 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | ||| || || || || ||||| | |||||| || ||||| ||||||||||| Sbjct 1225 TCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTG 1166 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || || || ||| ||| ||| | || | || ||| | || || || || || | | Sbjct 1165 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATC 1106 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || || |||||||| |||||||| Sbjct 1105 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || ||||| || ||||| |||||||| || | || || | | | || || Sbjct 1735 ACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTCG 1676 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| || || ||||| | |||||| || || || ||||||||||| || || Sbjct 1675 AGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGG 1616 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | | ||| | || || || ||||| | ||||| Sbjct 1615 ATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTA 1556 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || ||||| || ||||| Sbjct 1555 CCCGTCAATGTCTTCACAAAGATTTGCAT 1527 >seq21692 Length=9146 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || ||||| ||||| ||||| | || ||| | | || || | || Sbjct 2904 TGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCGTCCTCGAGCTGT 2845 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || || |||||||| || ||||| || || || ||||| ||||| || Sbjct 2844 TTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGAATCTTG 2785 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | | ||| || | || ||||| || |||| || || |||||| Sbjct 2784 GCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATAGTCTTCCCGGTT 2725 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||||| ||||||||||||||| Sbjct 2724 AGGGTTTTGACAAATATCTGCATG 2701 >seq1202 Length=22811 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || ||||| ||||| ||||| | || ||| | | || || | ||| Sbjct 3804 TGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGTCCGTCCTCGAGTTGT 3745 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||||| || ||||| || || || ||||| ||||| || Sbjct 3744 TTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGAATCTTG 3685 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | | ||| || | || | ||| || |||| || || |||||| Sbjct 3684 GCCTTCACATTCTCAATTGAGTCCGAAGGCTCAATTTCGAGGGTGATAGTCTTCCCGGTT 3625 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||||| ||||||||||||||| Sbjct 3624 AGGGTTTTGACAAATATCTGCATG 3601 >seq431821 Length=605 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||||||||||||||| |||||||| | || | || ||||| ||| Sbjct 86 TGAAGTGTAGATTCTTTTTGTATCTTGTAATCCATCAATGTGTGTCCGTCATCCAACTGC 145 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381 || |||||||| || || |||||||| || || |||||||| || ||||||| || Sbjct 146 TTGCCTGCAAAGATTAAGCGCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTCAA 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393948599535372