Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq466127 158 8e-33 seq460935 91.5 1e-12 seq46948 87.8 1e-11 seq155539 86.0 4e-11 >seq466127 Length=530 Score = 158 bits (174), Expect = 8e-33 Identities = 297/427 (70%), Gaps = 10/427 (2%) Strand=Plus/Plus Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT-AATACTAT 474513 |||| || ||||| ||||| |||| | || | || | | | || || |||||| | Sbjct 1 GAACGCCTCATTGGGGATGCCGCTAGGAACCAGGTGGC-TATGAACCCGTCGAATACTGT 59 Query 474514 TTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATAT 474573 |||||||| || | | ||||| || || || || || |||||||| |||| Sbjct 60 CTTTGATGCCAAGCGCCTAATTGGCCGACGCTTCGACGACCCCGCTGTCCAAAGTGATGC 119 Query 474574 GCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AATA 474631 | || ||||| |||| | | || ||| |||||| |||||| | || |||| | || Sbjct 120 GAAGCACTGGCCATTTACGATTATCAATTCTGGTGGCAAACCAAAGATCGAAGTCGAGTA 179 Query 474632 CACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAA 474691 | | | |||| |||||||| | ||| |||| || |||||||| | | ||| Sbjct 180 CCGGGGAGAGAAA--AAACAATTCAATGCTGAAGAAATCTCCTCAATGGTGCTGGTTAAA 237 Query 474692 ATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTG 474749 ||||| |||| || ||| | || || || ||||| | | ||||| || || | |||| Sbjct 238 ATGAAGGAAACTGCCGAGGCC-TACCTAGG-CAAGACGGTCACTGACGCTGTCGTCACTG 295 Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809 |||| || ||||| || ||| |||||||||||| || |||||||| |||| || | | Sbjct 296 TTCCTGCCTATTTCAACGATAGTCAACGTCAAGCCACGAAAGATGCAGGAACCATCTCGG 355 Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 | || |||||| | || |||||||||||||| || || || || | ||||| || || | Sbjct 356 GCCTCAATGTTCTGCGCATTATTAATGAACCGACGGCCGCTGCGATAGCTTACGGACTCG 415 Query 474870 ATAAGAA 474876 | ||||| Sbjct 416 ACAAGAA 422 >seq460935 Length=541 Score = 91.5 bits (100), Expect = 1e-12 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| || |||||||| || || ||| |||| | ||||||||||| ||||| || | Sbjct 540 ATGCAGTGATAACTGTTCCTGCCTACTTTGATGACGCCCAACGTCAAGCGACTAAGGAGG 481 Query 474795 CGGGAAGAATT-GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 | || ||||| || || || | |||| || | | |||||||| || || ||||| Sbjct 480 CAGG-CGAATTGGCTGGCCTCACTGTTGACCGAGTAGTGAATGAACCCACTGCTGCCGCT 422 Query 474854 CTTGCTTATGGTCTTGATAAGA 474875 || ||||||||| |||| |||| Sbjct 421 CTGGCTTATGGTATTGACAAGA 400 >seq46948 Length=6204 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| || || | | |||||| ||||| || || ||||| || || || ||| Sbjct 1021 TTGTAATCAGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGT 962 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || ||||| ||||||||||| ||||| || ||| || || | ||| Sbjct 961 TGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCA 902 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | || || |||||||| || ||||| || || |||||||| || || Sbjct 901 CTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTG 846 >seq155539 Length=2399 Score = 86.0 bits (94), Expect = 4e-11 Identities = 204/303 (67%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 475872 ATATTGTACTTGTTG-ACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATT 475930 ||||||| ||||||| |||| || || | | ||| | || || || ||||| | Sbjct 1343 ATATTGT-CTTGTTGGACGTTTGCCCCCTGACCCTGGGTATAGAGACCGTGGGAGGCGTC 1401 Query 475931 ATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCC 475990 ||||| || |||||| |||| || ||||| || || | |||| ||||| Sbjct 1402 ATGACCAAGCTTATTCCACGAAACACCGTGATCCCTACGAAGAAGGCTCAAGTCTTTTCT 1461 Query 475991 ACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTC 476050 || | | || ||||| | || || |||||||| | | ||||| ||| | | | Sbjct 1462 ACAGCTGCGGACAATCAGCCGACCGTTACCATCCAGGTTTACGAAGGCGAACGCCTAATG 1521 Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA-GGTATTCCTCCTGCTCCCAG 476109 || || |||||| | || || | || | ||||| ||||| ||||| || ||| | Sbjct 1522 ACGAAGGATAATCATTTTCTCGGCAAGTTCGA-CTTGACTGGTATCCCTCCAGCCCCCCG 1580 Query 476110 AGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTAC 476169 ||||||||||| |||||||| |||||||| | |||| ||||| || || | || || Sbjct 1581 CGGAGTTCCTCAGATTGAAGTCACTTTTGAGGTGGATGTGAATGGCATCCTGAGAGTAAC 1640 Query 476170 TGC 476172 ||| Sbjct 1641 TGC 1643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3247486894974608