Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq466127 158 8e-33
seq460935 91.5 1e-12
seq46948 87.8 1e-11
seq155539 86.0 4e-11
>seq466127
Length=530
Score = 158 bits (174), Expect = 8e-33
Identities = 297/427 (70%), Gaps = 10/427 (2%)
Strand=Plus/Plus
Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT-AATACTAT 474513
|||| || ||||| ||||| |||| | || | || | | | || || |||||| |
Sbjct 1 GAACGCCTCATTGGGGATGCCGCTAGGAACCAGGTGGC-TATGAACCCGTCGAATACTGT 59
Query 474514 TTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATAT 474573
|||||||| || | | ||||| || || || || || |||||||| ||||
Sbjct 60 CTTTGATGCCAAGCGCCTAATTGGCCGACGCTTCGACGACCCCGCTGTCCAAAGTGATGC 119
Query 474574 GCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AATA 474631
| || ||||| |||| | | || ||| |||||| |||||| | || |||| | ||
Sbjct 120 GAAGCACTGGCCATTTACGATTATCAATTCTGGTGGCAAACCAAAGATCGAAGTCGAGTA 179
Query 474632 CACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAA 474691
| | | |||| |||||||| | ||| |||| || |||||||| | | |||
Sbjct 180 CCGGGGAGAGAAA--AAACAATTCAATGCTGAAGAAATCTCCTCAATGGTGCTGGTTAAA 237
Query 474692 ATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTG 474749
||||| |||| || ||| | || || || ||||| | | ||||| || || | ||||
Sbjct 238 ATGAAGGAAACTGCCGAGGCC-TACCTAGG-CAAGACGGTCACTGACGCTGTCGTCACTG 295
Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809
|||| || ||||| || ||| |||||||||||| || |||||||| |||| || | |
Sbjct 296 TTCCTGCCTATTTCAACGATAGTCAACGTCAAGCCACGAAAGATGCAGGAACCATCTCGG 355
Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869
| || |||||| | || |||||||||||||| || || || || | ||||| || || |
Sbjct 356 GCCTCAATGTTCTGCGCATTATTAATGAACCGACGGCCGCTGCGATAGCTTACGGACTCG 415
Query 474870 ATAAGAA 474876
| |||||
Sbjct 416 ACAAGAA 422
>seq460935
Length=541
Score = 91.5 bits (100), Expect = 1e-12
Identities = 107/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
||||||| || |||||||| || || ||| |||| | ||||||||||| ||||| || |
Sbjct 540 ATGCAGTGATAACTGTTCCTGCCTACTTTGATGACGCCCAACGTCAAGCGACTAAGGAGG 481
Query 474795 CGGGAAGAATT-GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853
| || ||||| || || || | |||| || | | |||||||| || || |||||
Sbjct 480 CAGG-CGAATTGGCTGGCCTCACTGTTGACCGAGTAGTGAATGAACCCACTGCTGCCGCT 422
Query 474854 CTTGCTTATGGTCTTGATAAGA 474875
|| ||||||||| |||| ||||
Sbjct 421 CTGGCTTATGGTATTGACAAGA 400
>seq46948
Length=6204
Score = 87.8 bits (96), Expect = 1e-11
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| ||||||| || || | | |||||| ||||| || || ||||| || || || |||
Sbjct 1021 TTGTAATCAGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGT 962
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|| || || || ||||| ||||||||||| ||||| || ||| || || | |||
Sbjct 961 TGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCA 902
Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| | | || || |||||||| || ||||| || || |||||||| || ||
Sbjct 901 CTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTG 846
>seq155539
Length=2399
Score = 86.0 bits (94), Expect = 4e-11
Identities = 204/303 (67%), Gaps = 4/303 (1%)
Strand=Plus/Plus
Query 475872 ATATTGTACTTGTTG-ACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATT 475930
||||||| ||||||| |||| || || | | ||| | || || || ||||| |
Sbjct 1343 ATATTGT-CTTGTTGGACGTTTGCCCCCTGACCCTGGGTATAGAGACCGTGGGAGGCGTC 1401
Query 475931 ATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCC 475990
||||| || |||||| |||| || ||||| || || | |||| |||||
Sbjct 1402 ATGACCAAGCTTATTCCACGAAACACCGTGATCCCTACGAAGAAGGCTCAAGTCTTTTCT 1461
Query 475991 ACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTC 476050
|| | | || ||||| | || || |||||||| | | ||||| ||| | | |
Sbjct 1462 ACAGCTGCGGACAATCAGCCGACCGTTACCATCCAGGTTTACGAAGGCGAACGCCTAATG 1521
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA-GGTATTCCTCCTGCTCCCAG 476109
|| || |||||| | || || | || | ||||| ||||| ||||| || ||| |
Sbjct 1522 ACGAAGGATAATCATTTTCTCGGCAAGTTCGA-CTTGACTGGTATCCCTCCAGCCCCCCG 1580
Query 476110 AGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTAC 476169
||||||||||| |||||||| |||||||| | |||| ||||| || || | || ||
Sbjct 1581 CGGAGTTCCTCAGATTGAAGTCACTTTTGAGGTGGATGTGAATGGCATCCTGAGAGTAAC 1640
Query 476170 TGC 476172
|||
Sbjct 1641 TGC 1643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3247486894974608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |