Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq57265 105 9e-18 seq145287 102 1e-16 >seq57265 Length=5505 Score = 105 bits (116), Expect = 9e-18 Identities = 116/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 47937 TGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAA 47996 ||| || || || ||||| || ||||||||||| || || | |||| ||| ||||| || Sbjct 4322 TGCCCTGGTTATTTTACGTGTGACAAAAGTTTCGCCCCGGCGTGGACTTTCGTGATTGAA 4263 Query 47997 AAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTA 48056 || || ||| | || ||||||||||| || | ||||||||| ||| || |||||||| Sbjct 4262 TAGGATTCCATTGCACGCATACATTCCATAGGCTTCACGATAATTCACAACAATCCAGTA 4203 Query 48057 CCCATAGAGTTTTGCAACACCATAAGGAGAACG 48089 || || ||||| ||||| || |||||||| Sbjct 4202 GGAGTATAGCTTTGC-ACACCCTATGGAGAACG 4171 >seq145287 Length=2579 Score = 102 bits (112), Expect = 1e-16 Identities = 115/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 47937 TGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAA 47996 ||| || || || ||||| || ||||||||||| || || | |||| ||| ||||| || Sbjct 847 TGCCCTGGTTATTTTACGTGTGACAAAAGTTTCGCCCCGGCGTGGACTTTCGTGATTGAA 788 Query 47997 AAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTA 48056 || || ||| | || ||||||||||| || | ||||||||| || || |||||||| Sbjct 787 TAGGATTCCATTGCACGCATACATTCCATAGGCTTCACGATAATTTACAACAATCCAGTA 728 Query 48057 CCCATAGAGTTTTGCAACACCATAAGGAGAACG 48089 || || ||||| ||||| || |||||||| Sbjct 727 GGAGTATAGCTTTGC-ACACCCTATGGAGAACG 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661481502042720