Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq57265 105 9e-18
seq145287 102 1e-16
>seq57265
Length=5505
Score = 105 bits (116), Expect = 9e-18
Identities = 116/153 (76%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 47937 TGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAA 47996
||| || || || ||||| || ||||||||||| || || | |||| ||| ||||| ||
Sbjct 4322 TGCCCTGGTTATTTTACGTGTGACAAAAGTTTCGCCCCGGCGTGGACTTTCGTGATTGAA 4263
Query 47997 AAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTA 48056
|| || ||| | || ||||||||||| || | ||||||||| ||| || ||||||||
Sbjct 4262 TAGGATTCCATTGCACGCATACATTCCATAGGCTTCACGATAATTCACAACAATCCAGTA 4203
Query 48057 CCCATAGAGTTTTGCAACACCATAAGGAGAACG 48089
|| || ||||| ||||| || ||||||||
Sbjct 4202 GGAGTATAGCTTTGC-ACACCCTATGGAGAACG 4171
>seq145287
Length=2579
Score = 102 bits (112), Expect = 1e-16
Identities = 115/153 (75%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 47937 TGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAA 47996
||| || || || ||||| || ||||||||||| || || | |||| ||| ||||| ||
Sbjct 847 TGCCCTGGTTATTTTACGTGTGACAAAAGTTTCGCCCCGGCGTGGACTTTCGTGATTGAA 788
Query 47997 AAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTA 48056
|| || ||| | || ||||||||||| || | ||||||||| || || ||||||||
Sbjct 787 TAGGATTCCATTGCACGCATACATTCCATAGGCTTCACGATAATTTACAACAATCCAGTA 728
Query 48057 CCCATAGAGTTTTGCAACACCATAAGGAGAACG 48089
|| || ||||| ||||| || ||||||||
Sbjct 727 GGAGTATAGCTTTGC-ACACCCTATGGAGAACG 696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 661481502042720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |