Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq270649 84.2 3e-11 seq43131 84.2 3e-11 >seq270649 Length=1181 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTACT 13612 || || || || || ||||| || ||| | || ||||| | |||| ||||| Sbjct 169 GGCATCCCAAAATTAGATGATGCCAACGACGCCGGTACCAAGAATTCTGCCGCCTGTACG 228 Query 13613 CTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTT 13672 ||||| | || ||||| ||||| ||||| ||||| || ||||||||| | || ||| Sbjct 229 CTCATCCTTACGGAGGGAGATTCAGCTAAGACCCTGGCTGTTGCGGGTTTGAGCGTGGTT 288 Query 13673 GGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAA 13711 |||||||| | |||||||| || ||||| || || ||| Sbjct 289 GGTCGTGACCGTTACGGTGTTTTTCCACTGCGAGGCAAA 327 >seq43131 Length=6507 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTACT 13612 || || || || || ||||| || ||| | || ||||| | |||| ||||| Sbjct 4571 GGCATCCCAAAATTAGATGATGCCAACGACGCCGGTACCAAGAATTCTGCCGCCTGTACG 4630 Query 13613 CTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTT 13672 ||||| | || ||||| ||||| ||||| ||||| || ||||||||| | || ||| Sbjct 4631 CTCATCCTTACGGAGGGAGATTCAGCTAAGACCCTGGCTGTTGCGGGTTTGAGCGTGGTT 4690 Query 13673 GGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAA 13711 |||||||| | |||||||| || ||||| || || ||| Sbjct 4691 GGTCGTGACCGTTACGGTGTTTTTCCACTGCGAGGCAAA 4729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592972315140480