Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq21692 100 6e-16
seq1202 100 6e-16
seq431821 87.8 4e-12
>seq21692
Length=9146
Score = 100 bits (110), Expect = 6e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| || | || | || | ||| | ||| || |||||||||||| ||
Sbjct 2929 ACCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGA 2870
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| || || | || || | ||||| ||||| |||||||||| |||||| || || ||
Sbjct 2869 GAGAGTGCGCCCGTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGG 2810
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| || || ||||| || || || || ||||| || || || || | || ||
Sbjct 2809 GATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAAC 2750
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||| || || || || || || |||| ||||| | ||||||||||||
Sbjct 2749 TTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCAT 2702
>seq1202
Length=22811
Score = 100 bits (110), Expect = 6e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| || | || | || | ||| | ||| || |||||||||||| ||
Sbjct 3829 ACCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGA 3770
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| || ||| | || || | |||||| ||||| ||||||| || |||||| || || ||
Sbjct 3769 GAGAGTGCGTCCGTCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGG 3710
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| || || ||||| || || || || ||||| || || || || | || |
Sbjct 3709 GATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAAT 3650
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||| || || || || || || |||| ||||| | ||||||||||||
Sbjct 3649 TTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCAT 3602
>seq431821
Length=605
Score = 87.8 bits (96), Expect = 4e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
||||| || | |||||||| || || || ||||||||||| | |||||| ||||||||
Sbjct 122 AATGTGTGTCCGTCATCCAACTGCTTGCCTGCAAAGATTAAGCGCTGTTGGTCAGGTGGA 181
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
|| || || ||||||| | | |||||| || ||| | ||||| || | ||
Sbjct 182 ATGCCCTCCTTATCTTCAAGACGACACTTTACAATATATATGGTATCTGTCGGGTAGACG 241
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532
|| ||||| || || || ||||| || |||| ||||||||
Sbjct 242 CTGAGCGTAATTGTCTTTCCCGTTAAGGTCTTAAAAAATATCT 284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 978395225694600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |